| Crop | eggplant |
|---|---|
| Population | AL2010 |
| Linkage Group | E_01 |
| Marker Type | SSR |
| Map Position | 123.3 |
| Annotation | |
| Source Name | emf01M07 |
| Source Type | genomic |
| Source Sequence | CTAGTAAAATCCTTATATGGACTCAAGCAGGCTTTAAGAC AATGGAATGCCAAGTTGACTGAAGCATTGCTGAGCTCCAC GCTCTACAGGAGGGCAAGGATACTTCAGTATTTCAAAGTG AACGCTCAACAGTTATTATTTAGAAAGATGAGTTAATGAA ATCTTAAGCAGGCAGAACATCACAGCAATTAGAAATAAAC GAACAGATCAACAAATAGAGAGAGAGAGAGAGAGAGAGAG AGAGAACTGATGAAGAGGCATAAGTTATAAAGAACCTTCC AAACAAATTTGATTACGGAATACAGTTTGAAAGGTAAAAT TAGTTAATGGTTGAAAGGCTCAAAAGCGGCAACTGAATCT AGCTCGTTTTGCATGTGTATGCGGAGGTATGATGGATTTG GAGTGGAGGTTGGGAGGATTCTAGGTTTTTCTTGAACCTT CTTTGAAGATGAAAAAGATGAAGATGAAGAAAAATGAAGA AATCCTCTTCCTTTCTTACATATATAATCACTTAACTATA AAAAGGACCATTTTGCCCTTGCAA |
| Developer | NIVTS |
| Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
| motif | (ag)14 |
|---|---|
| PCR product (bp) | 202 |
| fwd primer | emf01M07/U |
| fwd primer seq. | cttaagcaggcagaacatcacagc |
| rev primer | emf01M07/L |
| rev primer seq. | agctagattcagttgccgcttttg |
| fluor. primer | emf01M07/U_PET |
| dye | PET |
| fluor. Primer seq. | PET-attaagcaggcagaacatcacagc |
| PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
| polymerase | Roche Taq |
| Line | allele-1 | allele-2 |
|---|---|---|
| AE-P03 | 205 | 205 |
| EPL-1 | 204 | 204 |
| LS1151 (S.linneanum) | 208 | 208 |
| LS1934 | 205 | 212 |
| LS4021 (S. incanum) | 223 | 223 |
| Nakate Shinkuro | 204 | 204 |
| Senryo 2 | 204 | 204 |
| Shironasu | 204 | 204 |
| WCGR112-8 | 204 | 204 |
| White Egg | 204 | 204 |
| PI 286106 | 204 | 204 |
| Population | Linkage Group | Position |
|---|---|---|
| AL2010 | E_01 | 123.3 |
| LW2010 | E_01 | 127.7 |
| LWA2010 | LWA_01 | 105.711 |
| LWAE2012 | E_01 | 106.276 |
| LWF2_2022 | E_01 | 59.1 |
| N28F2 | E_01 | 26.7 |
| DB | Program | Definition | E-Value |
|---|---|---|---|
| TomatoBAC_end | BLASTN | SL_MboI0142K24_SP6_363778 Chromat_file:SL_MboI_142_K24-SP6 SGN_GSS_ID:380989 (vector and quality trimmed) | 5e-09 |
| EST Name | Species | Strain |
|---|
