| Crop | eggplant |
|---|---|
| Population | AL2010 |
| Linkage Group | E_01 |
| Marker Type | SSR |
| Map Position | 135.8 |
| Annotation | |
| Source Name | eme03H10 |
| Source Type | genomic |
| Source Sequence | CTGGTAAAGGCTGAAAAGGCTAGCTGGAATTGTTCCCTGA AGTCCTGTGTTTTCCATTACCCTGTCAGTACAAGGTCATT CATTAGGTCACAAAAGGGAATTCAATGTATAAGAATGAGA AAAAGGAAACCTGTCCATATTTAAATGGATGCAGGCTGCG TACATATGCACTTGTACACCTGCTCATGGACATGCATACA CAGATAAACGCGCAAAAGAGAGAGAGAGAGAGAGAGAGAG AGAGAGAGAGCATACAATGATGTTAAAGATTGCAGGCTTG GGATCCATGATGGAAAATCTGATGCATTAAACGAATTATT GCTCATGTCCCTGCAAAATAAGTGCCCATGATGGTGAGAC TAATAAATTTTCTTCATCATTTTTTTGGGTTTGGAAAAAG TAATTGGGGGAGAATATGTACAGTATGATGTTGAGAAATA ATAGACTATTAACTCAAAGGAATAACAGCACAAAACTAGG GATAAACAACTTACAAGTAGTTGAGGACATTCATGCCAGT GAGATTCGGCAA |
| Developer | NIVTS |
| Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
| motif | (ag)17 |
|---|---|
| PCR product (bp) | |
| fwd primer | eme03H10/U |
| fwd primer seq. | tggaattgttccctgaagtcctgt |
| rev primer | eme03H10/L |
| rev primer seq. | cccaagcctgcaatctttaacatc |
| fluor. primer | eme03H10/U_FAM |
| dye | FAM |
| fluor. Primer seq. | FAM-ATGGAATTGTTCCCTGAAGTCCTGT |
| PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
| polymerase | Roche Taq |
| Line | allele-1 | allele-2 |
|---|---|---|
| AE-P03 | 283 | 283 |
| EPL-1 | 267 | 267 |
| LS1151 (S.linneanum) | 269 | 269 |
| LS1934 | 273 | 279 |
| LS4021 (S. incanum) | 245 | 245 |
| Nakate Shinkuro | 267 | 267 |
| Senryo 2 | 267 | 283 |
| Shironasu | 283 | 283 |
| WCGR112-8 | 283 | 283 |
| White Egg | 273 | 273 |
| PI 286106 | 272 | 272 |
| Population | Linkage Group | Position |
|---|---|---|
| AL2010 | E_01 | 135.8 |
| ALF2 | AL01 | 118.2 |
| EW2009 | LG03 | 28.2 |
| LW2010 | E_01 | 136.7 |
| LWA2010 | LWA_01 | 114.576 |
| LWAE2012 | E_01 | 114.151 |
| LWF2_2022 | E_01 | 36.8 |
| N28F2 | E_01 | 15.1 |
| NAF2 | NA01 | 115.0 |
| DB | Program | Definition | E-Value |
|---|---|---|---|
| TomatoBAC_end | BLASTN | SL_EcoRI0001H07_T7_384327 Chromat_file:SL_EcoRI_001_H07-T7 SGN_GSS_ID:401521 (vector and quality trimmed) | 1e-09 |
| TomatoBAC_end | BLASTN | SL_EcoRI0097N18_T7_359741 Chromat_file:SL_EcoRI_097_N18-T7 SGN_GSS_ID:376567 (vector and quality trimmed) | 1e-09 |
| TomatoBAC_end | BLASTN | SL_MboI0011K07_T7_148079 Chromat_file:SL_MboI_11_K07-T7 SGN_GSS_ID:164906 (vector and quality trimmed) | 1e-09 |
| EST Name | Species | Strain |
|---|
