| Crop | eggplant |
|---|---|
| Population | AL2010 |
| Linkage Group | E_01 |
| Marker Type | SSR |
| Map Position | 123.3 |
| Annotation | |
| Source Name | EMB01I13 |
| Source Type | genomic |
| Source Sequence | CCCAAGTACAAGACGAAAGTGTGCAGACCAGAACCTTTAA GAACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACAA AGATGAATGAGGAATAACAAAAATATAATTGAGAGTAAAA TAAATCGCAACTGTAATTACCACCAATGTCACTTCCAGAA AATTCTATAAATAATAAAACTTTCAAAAACCAGCAATAGA GCAGTAATATTCTGTTGAGAAAGATTAGGTTAAGGGACCA GAACCAAAATGATTTAAAAGCTAAACTGCACGGACTCTTC ACTTTCAATGCCGCACCCGTGTTAGATTCTTCGAAAATAC ACTACTTTGGGCGAATCCGACACGCACCCACACTTTTAAA GAGTCCGAGCAACATAGCTTAAAAGTGCAAATATGATCTC TCTAATAAAGAAAGCTCATCCAAAATTATTCTAATATAAT GATCCTTATTCTGCACCAAACATGATTTCAACGGAGAAAA CACCCAAACAGTAAATTCAGTTAAGATGCTTGCTTAGTAT CTTGCCTCAAATAGTCAGAATATGAGTGTCCTGCCTCATG ACTGAATGTGATAACATTTTGATTATCATGCAAAACATTC ACCAGATN |
| Developer | NIVTS |
| Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
| motif | (AG)16 |
|---|---|
| PCR product (bp) | 333 |
| fwd primer | |
| fwd primer seq. | acaagacgaaagtgtgcagaccag |
| rev primer | EMB01I13pt |
| rev primer seq. | gtttcggattcgcccaaagtagtgtat |
| fluor. primer | |
| dye | FAM |
| fluor. Primer seq. | FAM-ACAAGACGAAAGTGTGCAGACCAG |
| PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
| polymerase | Roche Taq |
| Line | allele-1 | allele-2 |
|---|
| Population | Linkage Group | Position |
|---|---|---|
| AL2010 | E_01 | 123.3 |
| EW2009 | LG03 | 35.3 |
| LWA2010 | LWA_01 | 105.684 |
| LWAE2012 | E_01 | 106.38 |
| DB | Program | Definition | E-Value |
|---|
| EST Name | Species | Strain |
|---|
