| Crop | eggplant |
|---|---|
| Population | LWA2010 |
| Linkage Group | LWA_11 |
| Marker Type | SSR |
| Map Position | 50.325 |
| Annotation | |
| Source Name | emf21N12 |
| Source Type | genomic |
| Source Sequence | CTTGCAATGGAACCAACAATCCCAAAAATTTTAAGGTTAC CCAATTTTCAAAACATTCATAAAACAATTCAAAATTATGC ACATGACAAAAGTAATAATCACTATATATCTACAAATTAT ATACAGTACCTAAACATGTTGGTTCAACAGAAAATAAACT CATCCACAAGGAAAAAGAAACATGACAAGAAAACCTTGGG ATCAAAAATAGGAAAGTTATGGACTAAAGGCTACTCAGAC TTCACCCTAGTCAATAACCTCCCACATCCCACCAAAAGAT GATACTTTGTCCTCAAAGTAAACACACACACACACACACA CACACACACACACATATATATATATATATAAGTTTTTAAA AATCCAAAATGGAAAACAATCGTCCAACAAGTTAGATGAA AACTCAATATCCAAAATAAAACATCCATAAAAATAATAAC AAAACAAATTGTCTAAAGAAAAATATAGGAGAACAAAGTA TCAAAAAGCATCAATAAGGATGGGGGGTCAAAAGTATCAA ACACATGGTGCTCAAGCATCGGTATCCATCTGGTCCCGGG GCTCACTATGTTCCTTAGTGGTCTAGGCTGCAGTTGTACC TAA |
| Developer | NIVTS |
| Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
| motif | (ac)16a(ta)8 |
|---|---|
| PCR product (bp) | 291 |
| fwd primer | emf21N12/U |
| fwd primer seq. | agtcaataacctcccacatcccac |
| rev primer | emf21N12/L |
| rev primer seq. | atgcttgagcaccatgtgtttgat |
| fluor. primer | emf21N12/U_FAM |
| dye | FAM |
| fluor. Primer seq. | FAM-agtcaataacctcccacatcccac |
| PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
| polymerase | Roche Taq |
| Line | allele-1 | allele-2 |
|---|---|---|
| AE-P03 | 290 | 290 |
| EPL-1 | 290 | 290 |
| LS1151 (S.linneanum) | 302 | 302 |
| LS1934 | 290 | 290 |
| LS4021 (S. incanum) | 298 | 298 |
| Nakate Shinkuro | 290 | 290 |
| Senryo 2 | 290 | 290 |
| Shironasu | 290 | 290 |
| WCGR112-8 | 288 | 288 |
| White Egg | 290 | 290 |
| Population | Linkage Group | Position |
|---|---|---|
| EW2009 | LG01 | 56.9 |
| LW2010 | E_11 | 52.7 |
| LWA2010 | LWA_11 | 50.325 |
| LWAE2012 | E_11 | 55.212 |
| LWF2_2022 | E_11 | 64.4 |
| DB | Program | Definition | E-Value |
|---|
| EST Name | Species | Strain |
|---|
