| Crop | eggplant |
|---|---|
| Population | LWA2010 |
| Linkage Group | LWA_10 |
| Marker Type | SSR |
| Map Position | 47.513 |
| Annotation | |
| Source Name | emg21C17 |
| Source Type | genomic |
| Source Sequence | NNNNNNNNNNNNNNNNNNNNNNNNCCTTGTGTCAATCACT GCATGCATGCGAACTAGCACAGAAACATTACAATCTTTGT CATCACTGTCTTTGCAGGATGCTAGAGAAAGTTTGCAAGG ATTCCCAGCTGCTTGTTGATCTTTATGTGAATTATGATTG TGATCTTCAAGCACCTAACTTGTTTGAGCGAATGGTCTCT CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTAG TAAGTTGGCTTTGCAATATCTTGGTTATTGTATGACCCAA ATGTCCTCTCTCTATTTGGTTTCTCTTATAGGTGACCACA ATATCTAAAATTGCACAAGGGACGCAAAATGCAGAGCCAA ATTCAGTTGCCACATCCCAGATAGCATCAATCAAAGCATC CTCTCTTCAGGCAACTCTTTAGAATACCCTGATATCTTGA TTCTATGTGATGACCTGGCACTTTTTGCTTTTTGGTCATC CAAGCGGATGATTTCTAACTTTATCTCATATCAATCCAAA TTTTCTATAGAAGACTTGAGTACGCTTTGTTACACTTGGC ATCAAGTTATTATTCAGCTTGTTGGTCCATTGCAAATACT TACTGATGTCCTTAAGTGGTTAAGTTGGCTGAGGTAAACC TGTCCAAACTCTCAGTCATAGTAAGTTCGATTGACATCCT CCTTTGCCTGAATTTTTCTTTTTATCATAAAATGGATGGG CTCTATATATCTTTCTTTCACGG |
| Developer | NIVTS |
| Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
| motif | (tc)20 |
|---|---|
| PCR product (bp) | 279 |
| fwd primer | emg21C17/U |
| fwd primer seq. | gattcccagctgcttgttgatctt |
| rev primer | emg21C17/L |
| rev primer seq. | tgctttgattgatgctatctggga |
| fluor. primer | emg21C17/U_VIC |
| dye | VIC |
| fluor. Primer seq. | VIC-atttcccagctgcttgttgatctt |
| PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
| polymerase | Roche Taq |
| Line | allele-1 | allele-2 |
|---|---|---|
| AE-P03 | 293 | 293 |
| EPL-1 | 290 | 290 |
| LS1151 (S.linneanum) | 261 | 261 |
| LS1934 | 293 | 293 |
| LS4021 (S. incanum) | 313 | 313 |
| Nakate Shinkuro | 291 | 291 |
| Senryo 2 | 291 | 291 |
| Shironasu | 293 | 293 |
| WCGR112-8 | 295 | 295 |
| White Egg | 293 | 293 |
| Population | Linkage Group | Position |
|---|---|---|
| EW2009 | LG09 | 41.8 |
| LW2010 | E_10 | 45.7 |
| LWA2010 | LWA_10 | 47.513 |
| LWAE2012 | E_10 | 52.609 |
| LWF2_2022 | E_10 | 46.6 |
| DB | Program | Definition | E-Value |
|---|---|---|---|
| TomatoBAC_end | BLASTN | SL_EcoRI0066N01_SP6_338916 Chromat_file:SL_EcoRI_066_N01-SP6 SGN_GSS_ID:355742 (vector and quality trimmed) | 8e-49 |
| EST Name | Species | Strain |
|---|
