| Crop | eggplant |
|---|---|
| Population | LWA2010 |
| Linkage Group | LWA_10 |
| Marker Type | SSR |
| Map Position | 27.242 |
| Annotation | |
| Source Name | emg01L20 |
| Source Type | genomic |
| Source Sequence | NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTNNNNN NNNNNNNNNNNNNNNNNNNCCAGTCAAAACTTCACAAATT CAGAAGATGCATGGTGTGGAGATGAGGATGTAGAGATGGA TGTGTGGATGTACCNNNNNTATATCCACACATAGGTAGAA ATTGAACAAGTAGGTACACGTGTTCTACGTGGCATAATAC TCGTGTAACGCAACGTGAGACACAAAATTGTTATGTAGGA CGAATGTGTCCATTTGTTCATATTTTATATGGATAGTAAA AGTGTCTACTTGTGCACCGATAAAATTAGTGGTCATAGTT GTTAGTTGAAGCGACAGTAAGAATCATATATGTGTGTGTG TGTGTGTGTGCCTTTTTTTTTCATCTGTCTCAAAAAGAAT GCCAAGATGCTTGATGAATAGAGCAGGAGTACAATGGTTC CATTGTACAAGAATAAGAGAGATATTCAAAACTGTAATAA TTATAGGGGTATCAAGTTGTTAAGCCACACTATGAAGGTG TGGAAGAGAGTAGTGGAGATGAGGGCGCCAAGAGTAGTAC CTATGTTAGAACCCGTACTTTGGTACGTTGGGNNNNNNNN NNNNNNNNNNNNNNNNANNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNN |
| Developer | NIVTS |
| Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
| motif | (tg)10 |
|---|---|
| PCR product (bp) | 241 |
| fwd primer | emg01L20/U |
| fwd primer seq. | tgtaacgcaacgtgagacacaaaa |
| rev primer | emg01L20/L |
| rev primer seq. | aatggaaccattgtactcctgctc |
| fluor. primer | emg01L20/U_PET |
| dye | PET |
| fluor. Primer seq. | PET-agtaacgcaacgtgagacacaaaa |
| PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
| polymerase | Roche Taq |
| Line | allele-1 | allele-2 |
|---|---|---|
| AE-P03 | 241 | 241 |
| EPL-1 | 241 | 241 |
| LS1151 (S.linneanum) | 241 | 241 |
| LS1934 | 241 | 241 |
| LS4021 (S. incanum) | 266 | 266 |
| Nakate Shinkuro | 241 | 241 |
| Senryo 2 | 241 | 241 |
| Shironasu | 241 | 241 |
| WCGR112-8 | 243 | 243 |
| White Egg | 241 | 241 |
| Population | Linkage Group | Position |
|---|---|---|
| LW2010 | E_10 | 26.0 |
| LWA2010 | LWA_10 | 27.242 |
| LWAE2012 | E_10 | 30.811 |
| LWF2_2022 | E_10 | 25.5 |
| DB | Program | Definition | E-Value |
|---|---|---|---|
| TomatoBAC_end | BLASTN | LE_HBa0234E13_T7_392018 Chromat_file:LE_HBa_234_E13-T7 SGN_GSS_ID:409212 (vector and quality trimmed) | 2e-15 |
| TomatoBAC_end | BLASTN | LE_HBa0091O12_T7_95543 Chromat_file:LE_HBa_091_O12-T7 SGN_GSS_ID:95543 (vector and quality trimmed) | 3e-11 |
| TomatoBAC_end | BLASTN | SL_MboI0019A12_T7_215820 Chromat_file:SL_MboI_19_A12-T7 SGN_GSS_ID:232646 (vector and quality trimmed) | 2e-09 |
| TomatoBAC_end | BLASTN | SL_MboI0095F21_T7_169785 Chromat_file:SL_MboI_95_F21-T7 SGN_GSS_ID:186611 (vector and quality trimmed) | 1e-07 |
| TomatoBAC_end | BLASTN | SL_EcoRI0072N22_T7_343233 Chromat_file:SL_EcoRI_072_N22-T7 SGN_GSS_ID:360059 (vector and quality trimmed) | 4e-07 |
| EST Name | Species | Strain |
|---|
