| Crop | eggplant |
|---|---|
| Population | LWA2010 |
| Linkage Group | LWA_10 |
| Marker Type | SSR |
| Map Position | 19.809 |
| Annotation | |
| Source Name | OVS03L08W |
| Source Type | EST |
| Source Sequence | TCTCTCCTCTTTTTTTTTTTTTACTTGGTAAGCTTAGTAG CAGCAATTCTCAAGTAAAAGGGAATATCGATGGCCTTTAT TGAACAAAGAGCTACTGATGTAAATCTTTTTGTTGGTTGC CAGCATTCCCTCATTGCTGAAGAATACAACTTTACCTTTA TCAAAAAAATAAATTCTCTCTCATATCATATGCTTATATC TAACAAGCAGATAAAGTACCCAACTTTTTGTTATAATGTA CATCATTCTAATTGGATCAAACTCTCCCCAGTTCGATTTA CATAACTTTGAGGCTCAAATACTGTACTTTTGCTCGGACA AAGAGAAGGCAACCCCCCCCCCCCATGGCTATAAAATCAC CAGTTGCATGCAAAAGAGTGAGCCTAAGTTGCAGGCCATC CTGGGATTTACCAAGCCAAGATAGGGGTCAGACTATCCTC AATGCCCCATTGTATTAGCCCAAAAGTAAAGCATTGTCAT CATCACAGCCTATTTTGCACAATTACACCCAAAGGGGGAA AAGGAATACACACACACACACACATACAGAGAGAGATGAA GCTGTTGTTTGTATGAGTATCTCATTAACAAGGGCTGTTG CTTTAGTTGCTATAAAGAAATCATGGGCACAGTAGAGAGG GGCAACCACCCTTAC |
| Developer | NIVTS |
| Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
| motif | (ac)8atac(ag)4 |
|---|---|
| PCR product (bp) | 277 |
| fwd primer | ecm032/U |
| fwd primer seq. | tgcatgcaaaagagtgagcctaag |
| rev primer | ecm032/L |
| rev primer seq. | ccctctctactgtgcccatgattt |
| fluor. primer | ecm032/U_FAM |
| dye | FAM |
| fluor. Primer seq. | FAM-agcatgcaaaagagtgagcctaag |
| PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
| polymerase | Roche Taq |
| Line | allele-1 | allele-2 |
|---|---|---|
| AE-P03 | 278 | 278 |
| EPL-1 | 278 | 278 |
| LS1151 (S.linneanum) | 278 | 278 |
| LS1934 | 278 | 278 |
| LS4021 (S. incanum) | 277 | 277 |
| Nakate Shinkuro | 278 | 278 |
| Senryo 2 | 278 | 278 |
| Shironasu | 278 | 278 |
| WCGR112-8 | 280 | 280 |
| White Egg | 278 | 278 |
| Population | Linkage Group | Position |
|---|---|---|
| EW2009 | LG09 | 14.0 |
| LW2010 | E_10 | 19.1 |
| LWA2010 | LWA_10 | 19.809 |
| LWAE2012 | E_10 | 22.581 |
| LWF2_2022 | E_10 | 19.3 |
| DB | Program | Definition | E-Value |
|---|
| EST Name | Species | Strain |
|---|
