| Crop | eggplant |
|---|---|
| Population | LWA2010 |
| Linkage Group | LWA_04 |
| Marker Type | SSR |
| Map Position | 44.245 |
| Annotation | |
| Source Name | emd17D06 |
| Source Type | genomic |
| Source Sequence | ACTATGGTCTACCTTTGGCAAGTAGATCACCCTTTCCTCC AGTGTACGGAGAACATCAGAATTCTATGTAATAGCTCGCA TGGTCTTATATGTCGATTGAGGTCTCATCCCCATACGTTT AAGTATTATGACATTTATTCATCATGGATTTACGGCATAT TATTATGACATCCTTTCTTATATACTTCTCTCTCTCTCTC TCTTTATATATATATGCCTTTGTTATCTAACATTGAAATA TGGGTTATCATATTCATATGTATAGCATGCCCAAATATTT AGTACATTCAAATGTACTAATGCATATTTTTTTGCCTAAA GGATCTAACCATATAGAAACTAGAGATGATCTGCAGCCAC CTCTTCACGGCTAGATTGGGCTCATGAGAATTTGCTTGTA GTGAGTCCTTTACTCCAAGGACAAGACCCACCTTCTATCT ACTTATAATATGTTATGGTTATTATATGTCTTTTATTTTG AGGGTGAGCCTAGTACATGTCTTGG |
| Developer | NIVTS |
| Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
| motif | (tat)3gacatcctttct(ta)3ct(tc)8tt(ta)5 |
|---|---|
| PCR product (bp) | 300 |
| fwd primer | emd17D06/U |
| fwd primer seq. | tgaggtctcatccccatacgttta |
| rev primer | emd17D06/L |
| rev primer seq. | aagcaaattctcatgagcccaatc |
| fluor. primer | emd17D06/U_VIC |
| dye | VIC |
| fluor. Primer seq. | VIC-agaggtctcatccccatacgttta |
| PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
| polymerase | Roche Taq |
| Line | allele-1 | allele-2 |
|---|---|---|
| AE-P03 | 306 | 306 |
| EPL-1 | 307 | 307 |
| LS1151 (S.linneanum) | 310 | 310 |
| LS1934 | 306 | 306 |
| LS4021 (S. incanum) | 332 | 332 |
| Nakate Shinkuro | 306 | 306 |
| Senryo 2 | 306 | 306 |
| Shironasu | 307 | 307 |
| WCGR112-8 | 305 | 305 |
| White Egg | 307 | 307 |
| Population | Linkage Group | Position |
|---|---|---|
| EW2009 | LG05 | 41.2 |
| LW2010 | E_04 | 42.2 |
| LWA2010 | LWA_04 | 44.245 |
| LWAE2012 | E_04 | 43.567 |
| LWF2_2022 | E_04 | 62.7 |
| DB | Program | Definition | E-Value |
|---|
| EST Name | Species | Strain |
|---|
