| Crop | eggplant |
|---|---|
| Population | LWA2010 |
| Linkage Group | LWA_04 |
| Marker Type | SSR |
| Map Position | 44.222 |
| Annotation | |
| Source Name | emd09B01 |
| Source Type | genomic |
| Source Sequence | ACTATGATATAATTGAGATCACGCACATTGCTTCACTATT ATTTATGCTTTTGATATTTGTGATGGCTACGACCAAAAGA TGAGTAAGGTAATAAGTTGATTGGTGGCTGAGGTTTCTAC TGGTTGATGTTTAGTCAAGGTTTCTTCTAGCGATCCTAGG TAATATGCCGATTAATATTGAGTCTGAGGTTATTTCTGGA GGGATGAGCATTGGCCGAGGCCATTACCAGCAATGTTCAC TGATACATGGTCTATGTGAGACCCTCATGAATTCCCTTCT GACACATATATTGATCAACAGATGTGTATCATAGGACAGA CATTCATCATGATTATTTGCCATATTATTTACATCCCATG ACATGCACTTCATCTCATATCACTCTTGCTTTGATTTTAT TTTATGAATTGTCTATGGGACTTGATATTTATTATATCAT TTGACTTGAGTGTCAGTTGAATATATATATATATGTGTGT GTGTGTGAGCGCGTGCGCGCGCGCGTGTGTGTGTGTATGT GTGTGTGATATAAGGTGATGGGTATATCTAAATTTTTGTG ATTGTATATTATATTGTGTTTGGACTTTCCTGAGTGCAGG TGTGTAAGTTCGGTGGTATATGGATGAGTGTTAAGGAGTA CTTGTGTTCTTCATTGCTTCACCTTAGGTTAGTTTCCATT TTGCTGAGTACCTGTGATTTGGTGCTCACCCTTTGCTACA TTTTTG |
| Developer | NIVTS |
| Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
| motif | (ta)6(tg)7agcgcgtg(cg)5(tg)5ta(tg)5 |
|---|---|
| PCR product (bp) | 238 |
| fwd primer | emd09B01/U |
| fwd primer seq. | tgcacttcatctcatatcactcttgc |
| rev primer | emd09B01/L |
| rev primer seq. | acctgcactcaggaaagtccaaac |
| fluor. primer | emd09B01/U_FAM |
| dye | FAM |
| fluor. Primer seq. | FAM-agcacttcatctcatatcactcttgc |
| PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
| polymerase | Roche Taq |
| Line | allele-1 | allele-2 |
|---|---|---|
| AE-P03 | 244 | 244 |
| EPL-1 | 242 | 242 |
| LS1151 (S.linneanum) | 278 | 278 |
| LS1934 | 244 | 244 |
| LS4021 (S. incanum) | 194 | 194 |
| Nakate Shinkuro | 244 | 244 |
| Senryo 2 | 242 | 244 |
| Shironasu | 244 | 244 |
| WCGR112-8 | 242 | 242 |
| White Egg | 244 | 244 |
| Population | Linkage Group | Position |
|---|---|---|
| LW2010 | E_04 | 42.2 |
| LWA2010 | LWA_04 | 44.222 |
| LWAE2012 | E_04 | 43.552 |
| LWF2_2022 | E_04 | 62.7 |
| DB | Program | Definition | E-Value |
|---|
| EST Name | Species | Strain |
|---|
