| Crop | eggplant |
|---|---|
| Population | LWA2010 |
| Linkage Group | LWA_04 |
| Marker Type | SSR |
| Map Position | 68.848 |
| Annotation | |
| Source Name | ROT02D20W |
| Source Type | EST |
| Source Sequence | GGGGCCGGCTCAAAATCCATGGAGGTTTTCCATCAATTTC TGCACTTCCGATAGATTAACTCTATCCTTATCTGCACTTT CTCCTTCTCTCTCTACATATACATACAGCCGAAACAGTTT TTTTGTTGTTTTGTGTGTGTGTGTGTGTTTGAATTGTTAG GGGCATGGAGGTGGTGGAGATGACAGGTACAAAGCCGATC CAGTTGGTGAGAGCTAAATCGGAACAGGATCGGATTAAGG TGAAGAGAAAAACGCTAGAGGCTGTGTTACAGGAATGCGA ACGAGCTCTCGAATTGCTTAGTACAACTGGTTCTGTTGAG GATGATGATGCTGAGGAATCCAACTCTAGTAGCGATGTTG ACCGGGATGCTTTGGACGACTCCGGTCAAGGATCTTCTAC TCCATCTGTTGATACCGAGANNNNNTCTCTTAAGCAGACC AAGGATTTGACACCAAACCAACTTCAAGATGCCCTCAGCA AGACATTCTCTTTGAAAAAGAAGAAAGGAAAGCTCCGGAA GGCATGGGATGGAAGCAAAGTTATTTACAATGTAGCATCT TGGGGAGCTACAGCTATTGGGATATACCAAAACCCAGCTA TTCTAAGAGCTGCATCGGCGGCGTTCTGGACTTCTTGCCG TGTAATATCAAAGCTTTTATAAGCAGCAATTTTGGTTTAG CTGAAATCCCGAGGCTCCGCCTGCAGACTGAGCATTGTGC TTGTGCCTTCCGGTTGGGTTGTTGATTACTTAGTGTGTAA TATAAATGCCATTTTTTTGTTTAATCATGTAAATATTTCG CCAATTGAATAGCCTCTGTGCAAATGATTGGGCTTACTTT GATGATCTTGTTTGATTATTGAATCTCTACCACTGCAGTT GATCACCG |
| Developer | NIVTS |
| Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
| motif | (tg)8 |
|---|---|
| PCR product (bp) | 221 |
| fwd primer | ecm070/U |
| fwd primer seq. | ctcaaaatccatggaggttttcca |
| rev primer | ecm070/L |
| rev primer seq. | tcctgttccgatttagctctcacc |
| fluor. primer | ecm070/U_NED |
| dye | NED |
| fluor. Primer seq. | NED-atcaaaatccatggaggttttcca |
| PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
| polymerase | Roche Taq |
| Line | allele-1 | allele-2 |
|---|---|---|
| AE-P03 | 226 | 226 |
| EPL-1 | 226 | 226 |
| LS1151 (S.linneanum) | 230 | 230 |
| LS1934 | 226 | 226 |
| LS4021 (S. incanum) | 222 | 222 |
| Nakate Shinkuro | 226 | 226 |
| Senryo 2 | 226 | 226 |
| Shironasu | 226 | 226 |
| WCGR112-8 | 228 | 228 |
| White Egg | 226 | 226 |
| Population | Linkage Group | Position |
|---|---|---|
| EW2009 | LG05 | 66.1 |
| LW2010 | E_04 | 65.8 |
| LWA2010 | LWA_04 | 68.848 |
| LWAE2012 | E_04 | 67.321 |
| LWF2_2022 | E_04 | 87.9 |
| DB | Program | Definition | E-Value |
|---|
| EST Name | Species | Strain |
|---|
