| Crop | eggplant |
|---|---|
| Population | LWA2010 |
| Linkage Group | LWA_01 |
| Marker Type | SSR |
| Map Position | 55.339 |
| Annotation | |
| Source Name | emg21F05 |
| Source Type | genomic |
| Source Sequence | CCAAGCCCAGGGATTGAAAAATCTATAGTGGCGGGTCTAT CTTCTTTTGGGTGAGCTGCGGAGCAGGTTAAGATCATGTT GTTCATTGAGAATTGAAGAGGGGAGAATGAGCAGACATCG AACGATTAATTTCGATTTAGTGTATAACCGTCCTGAATAA TTGGAATGATCTTTTTAGTTTATAAAAAAAACTCGAAATA TTCTCGAACTGAATCGAAGAACTTTAAACACACACACACA CACACACACACACACACACACATATATATATATATATTTC CTAGGCCCCAAAATCTTCCCTCTTAGGAAAT |
| Developer | NIVTS |
| Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
| motif | (ac)17a(ta)7 |
|---|---|
| PCR product (bp) | 216 |
| fwd primer | emg21F05/U |
| fwd primer seq. | gaattgaagaggggagaatgagca |
| rev primer | emg21F05/L |
| rev primer seq. | taagagggaagattttggggccta |
| fluor. primer | emg21F05/U_FAM |
| dye | FAM |
| fluor. Primer seq. | FAM-atattgaagaggggagaatgagca |
| PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
| polymerase | Roche Taq |
| Line | allele-1 | allele-2 |
|---|---|---|
| AE-P03 | 220 | 220 |
| EPL-1 | 218 | 218 |
| LS1151 (S.linneanum) | 226 | 226 |
| LS1934 | 220 | 222 |
| LS4021 (S. incanum) | 275 | 275 |
| Nakate Shinkuro | 220 | 220 |
| Senryo 2 | 218 | 220 |
| Shironasu | 220 | 220 |
| WCGR112-8 | 219 | 219 |
| White Egg | 221 | 221 |
| Population | Linkage Group | Position |
|---|---|---|
| EW2009 | LG03 | 87.9 |
| LW2010 | E_01 | 64.4 |
| LWA2010 | LWA_01 | 55.339 |
| LWAE2012 | E_01 | 60.123 |
| LWF2_2022 | E_01 | 124.1 |
| DB | Program | Definition | E-Value |
|---|---|---|---|
| TomatoBAC_end | BLASTN | LE_HBa0154J10_T7_75331 Chromat_file:LE_HBa_154_J10-T7 SGN_GSS_ID:75331 (vector and quality trimmed) | 2e-22 |
| TomatoBAC_end | BLASTN | LE_HBa0048P07_SP6_64092 Chromat_file:LE_HBa_048_P07-SP6 SGN_GSS_ID:64092 (vector and quality trimmed) | 2e-22 |
| TomatoBAC_end | BLASTN | LE_HBa0098E03_T7_30533 Chromat_file:LE_HBa_098_E03-T7 SGN_GSS_ID:30533 (vector and quality trimmed) | 3e-09 |
| EST Name | Species | Strain |
|---|
