| Crop | eggplant |
|---|---|
| Population | LWA2010 |
| Linkage Group | LWA_01 |
| Marker Type | SSR |
| Map Position | 62.348 |
| Annotation | |
| Source Name | emd03E06 |
| Source Type | genomic |
| Source Sequence | CCAGAATATATAATATGGGCAATATAACAGTTACAATCTC ATATAAACGTGTCTCAACTTCACGATATACAAGGCTTAAG TTATTCAACATGTAGCACAACATTTTAGTAGTCCAATCTC AACAATATACAAAATTCAAATTATTAAATACATCACACTT GGTTCATATATCAACTTCAAGAAGGAATAATATGAAATGG AATGAATGTTATGAAATGTAAGTAATGCAATGCAATGCCA AGTCATGATGCATGTTTGTTCTATGATATACATCTGTTGA TATAATGATACTGAAACTCATGAGAGCCACACATGGATCA TGTATCCTCCAAAAAAGACCTTGATATAATAATTAAGTCA GCAAATATCTCAATATAGAAATAAAGCTAACAAAGACCTC AGCACATCAATCACACGTAGGAATGACCTCAATAATTATC ACGATCGGTAGAAACCTCAGCTCCAAATGTCAATATCTCT CTCAACAACTTCTCGGTAGCAACCTCAGTCTCATATATCA ATATTTATTTTTCATTATCAACTAACCAGAATTATTTTTC TTTGATTTTTCATCATCAATGGGCGCGCCCGCATGCATGC GCGCACGCACACACACACACTCACACACACACACACATAT ATATGTATATATATCATCACAACACAAGTGTCACTTTTAT AATCATGAGGGCATACAAGATGTCTGTGTGGTTCTGATGA GACCTAAATTAGATTGATAA |
| Developer | NIVTS |
| Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
| motif | (tca)3atgg(gc)3ccgcatgcat(gc)3acg(ca)6ct(ca)8(ta)3tg(ta)4 |
|---|---|
| PCR product (bp) | 269 |
| fwd primer | emd03E06/U |
| fwd primer seq. | gatcggtagaaacctcagctccaa |
| rev primer | emd03E06/L |
| rev primer seq. | ccacacagacatcttgtatgccct |
| fluor. primer | emd03E06/U_NED |
| dye | NED |
| fluor. Primer seq. | NED-ACGATCGGTAGAAACCTCAGCTCCAA |
| PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
| polymerase | Roche Taq |
| Line | allele-1 | allele-2 |
|---|---|---|
| AE-P03 | 256 | 256 |
| EPL-1 | 271 | 271 |
| LS1151 (S.linneanum) | 270 | 270 |
| LS1934 | 256 | 271 |
| LS4021 (S. incanum) | 279 | 279 |
| Nakate Shinkuro | 271 | 271 |
| Senryo 2 | 271 | 271 |
| Shironasu | 271 | 271 |
| WCGR112-8 | 271 | 271 |
| White Egg | 256 | 256 |
| PI 286106 | 254 | 254 |
| Population | Linkage Group | Position |
|---|---|---|
| LW2010 | E_01 | 71.6 |
| LWA2010 | LWA_01 | 62.348 |
| LWAE2012 | E_01 | 66.301 |
| LWF2_2022 | E_01 | 114.4 |
| N28F2 | E_01 | 71.5 |
| NAF2 | NA01 | 54.5 |
| DB | Program | Definition | E-Value |
|---|
| EST Name | Species | Strain |
|---|
