| Crop | eggplant |
|---|---|
| Population | NAF2 |
| Linkage Group | NA10 |
| Marker Type | SSR |
| Map Position | 37.4 |
| Annotation | |
| Source Name | emj03E03 |
| Source Type | genomic |
| Source Sequence | CCAATCTCATTCACTGTCGTTTATGACAAGCTTTGAGTGT GGAGTGAGTTGAAACATGTACTGTCCTTTTTGAATAATTG TTTGGACTTATTGAGCTCTACTTTATGAAATATATTAACG AGAATATCATCATGTGTTTGTTGTGTAGATGTATATTCCG ATTCTTGTTCCAAGGGTATTAAAGCAGCAAGTCGAGGAAC TTACTAAGTTATACACACACACACACACACATATAAAGCT CACTCCTTACCTGCATGTCTATGCGGATACTGTTGCAAAA GGTGAGACTAGTGGTTGATGAGTTCATTTGTGTGGATTAT GTTTGTCCAAGGAGGCTACTATTTCAGCTCTATCTATCTA TAGCTTATGTCTTCTTTTCTTGGGATTTGG |
| Developer | NIVTS |
| Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
| motif | (ac)9 |
|---|---|
| PCR product (bp) | 264 |
| fwd primer | emj03E03/U |
| fwd primer seq. | tgacaagctttgagtgtggagtga |
| rev primer | emj03E03/L |
| rev primer seq. | tctcaccttttgcaacagtatccg |
| fluor. primer | emj03E03/U_FAM |
| dye | FAM |
| fluor. Primer seq. | FAM-agacaagctttgagtgtggagtga |
| PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
| polymerase | Roche Taq |
| Line | allele-1 | allele-2 |
|---|---|---|
| AE-P03 | 265 | 265 |
| EPL-1 | 267 | 267 |
| LS1151 (S.linneanum) | 263 | 263 |
| LS1934 | 265 | 265 |
| LS4021 (S. incanum) | 265 | 265 |
| Nakate Shinkuro | 267 | 267 |
| Senryo 2 | 267 | 267 |
| Shironasu | 263 | 263 |
| WCGR112-8 | 265 | 265 |
| White Egg | 267 | 267 |
| PI 286106 | 264 | 264 |
| Population | Linkage Group | Position |
|---|---|---|
| EW2009 | LG09 | 37.4 |
| N28F2 | E_10 | 22.1 |
| NAF2 | NA10 | 37.4 |
| DB | Program | Definition | E-Value |
|---|---|---|---|
| TomatoBAC_end | BLASTN | LE_HBa0085A11_T7_22677 Chromat_file:LE_HBa_085_A11-T7 SGN_GSS_ID:22677 (vector and quality trimmed) | 9e-10 |
| EST Name | Species | Strain |
|---|
