| Crop | eggplant |
|---|---|
| Population | NAF2 |
| Linkage Group | NA09 |
| Marker Type | SSR |
| Map Position | 54.4 |
| Annotation | |
| Source Name | emd13E02 |
| Source Type | genomic |
| Source Sequence | CACTAAGTATCTATGTTTAGAGGTGTTGTTAGACAAGTTA TGTATTATGTTTGAGCTTTGACTCATCCATGTTATTTAAG TATTGAACTCTCTCTCTCTCTCTCTCTCTCTCTCTGCCTT AGTTCTAATTCCCCTTATGCATGTTTCTTATGTTATTTTA TATTGCTTTCGCGACCAAGGATGTGTAATGATATGCTACA AGGCTTTTTTGGGGTTCTTTCGGGTTGCCCATTCGCCGGT CACGTCTAGACCCTACACTTGGGTCGTGGCAATAGATTTT TCTCTAAAGCAGTTATAATATGTATGGTTCCAGTATGCCA CCATTCAGCTTCAATTTTATTTGATCCAAGCTCTTCTTAT TCCTATGTGTCAGCCTATTTTGCTTCTGATATTAATATTA TGTATGAGCCGCTTGTCGAGTGTATTTGTGTTTCCACCAT GTTAGGTGAATCATTAGTGGTGAATTAGGTATATCGGGTT GTGTTGTGACTTTTATGATGAGAGACACTATTGCTGACTT GATATTATTGGATATGGTTCACTTCAATATGATATTGGGC ATGGATTAGTTGTTGCCATATCATACTATTCTTAACTATC ATGCGAAGGCTTTGACCTTATATTGACTCGACTTGCCTCA GTTAGTGTGGGCTGGCACCTAGATCCTATCCTAAAGGTGT TATTTCTTATATGCATACTTACTTG |
| Developer | NIVTS |
| Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
| motif | (tc)13 |
|---|---|
| PCR product (bp) | 231 |
| fwd primer | emd13E02/U |
| fwd primer seq. | tgtttgagctttgactcatccatgt |
| rev primer | emd13E02/L |
| rev primer seq. | aatctattgccacgacccaagtgt |
| fluor. primer | emd13E02/U_FAM |
| dye | FAM |
| fluor. Primer seq. | FAM-agtttgagctttgactcatccatgt |
| PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
| polymerase | Roche Taq |
| Line | allele-1 | allele-2 |
|---|---|---|
| AE-P03 | 232 | 232 |
| EPL-1 | 234 | 234 |
| LS1151 (S.linneanum) | 234 | 234 |
| LS1934 | 234 | 234 |
| LS4021 (S. incanum) | 228 | 228 |
| Nakate Shinkuro | 234 | 234 |
| Senryo 2 | 234 | 234 |
| Shironasu | 232 | 232 |
| WCGR112-8 | 232 | 232 |
| White Egg | 232 | 232 |
| PI 286106 | 231 | 231 |
| Population | Linkage Group | Position |
|---|---|---|
| EW2009 | LG04 | 0.0 |
| N28F2 | E_09 | 46.0 |
| NAF2 | NA09 | 54.4 |
| DB | Program | Definition | E-Value |
|---|
| EST Name | Species | Strain |
|---|
