| Crop | eggplant |
|---|---|
| Population | NAF2 |
| Linkage Group | NA07 |
| Marker Type | SSR |
| Map Position | 41.3 |
| Annotation | |
| Source Name | emi03O22 |
| Source Type | genomic |
| Source Sequence | CTCTGTACTTGTGGCTTCTAGGTCCTGCGAGGGATTCTTT GTTGTTGTTGTTGTTGTTGGGGATGTGTGTGTGTGTGTGT GTGTGTGTGTATTTCTATTATATAGAAAAGCCACTGAGAG GACGGTCAATGACAAACTTATAATTATCCTCATATGCAAG GGTAAATAATAATATATTGGATTATTTCATACGAACAAGT AATAAAAATCTATCAAAAAGGATAGTAAGAAAAAAAAAAG TAGTTCTAGAAATTTCTTTCTATTATATAGGAATATAAAA TAAATGATGATTATAAAAATGTAATTTCACATGCTAGCAA AAATCTACCAAAAAAGATAAGAAGATAAATAAAT |
| Developer | NIVTS |
| Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
| motif | (tgt)6tgggga(tg)13tatttctat(ta)3 |
|---|---|
| PCR product (bp) | 124 |
| fwd primer | emi03O22/U |
| fwd primer seq. | cttctaggtcctgcgagggattct |
| rev primer | emi03O22/L |
| rev primer seq. | agtttgtcattgaccgtcctctca |
| fluor. primer | emi03O22/U_VIC |
| dye | VIC |
| fluor. Primer seq. | VIC-attctaggtcctgcgagggattct |
| PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
| polymerase | Roche Taq |
| Line | allele-1 | allele-2 |
|---|---|---|
| AE-P03 | 132 | 132 |
| EPL-1 | 128 | 128 |
| LS1151 (S.linneanum) | 137 | 137 |
| LS1934 | 132 | 132 |
| LS4021 (S. incanum) | 121 | 121 |
| Nakate Shinkuro | 130 | 130 |
| Senryo 2 | 132 | 132 |
| Shironasu | 132 | 132 |
| WCGR112-8 | 132 | 132 |
| White Egg | 132 | 132 |
| PI 286106 | 133 | 133 |
| Population | Linkage Group | Position |
|---|---|---|
| EW2009 | LG02 | 65.1 |
| N28F2 | E_07_01 | 42.8 |
| NAF2 | NA07 | 41.3 |
| DB | Program | Definition | E-Value |
|---|
| EST Name | Species | Strain |
|---|
