| Crop | eggplant |
|---|---|
| Population | NAF2 |
| Linkage Group | NA07 |
| Marker Type | SSR |
| Map Position | 69.3 |
| Annotation | |
| Source Name | emg21O07 |
| Source Type | genomic |
| Source Sequence | CCATCTTCTTAAAACTGCTCCAGTATGTGAAGTCCATCTT GATCTGGTACGAGTTACATCAGGTTTGCATTGTCAAACTT CTATTTATGGGGAAACTTCTTCATCCTATTTGGTTACATA GATCAGTTATTGTTAACATGTCCCGTTTTAGTTGAGGTTT ATAAAATGCTCAGTAAGCTGTCGTGACTTACTGTAAAAAA AAATTGGAATTCACATAATTCCCTTTTATATGTCTATCTA TTCAATCCGTGATCTAATCATTACATGTGCCTGAAACTTC TTCTGTACTTGTTACATGTGAGCGAACTCACGCCTCCCTG GTGACTGCCCTGCAAAACAAAATGGCCAAGTCTTGACACA CACACACACACACACACACACACACACACACACACATATA TATATATATACACATGTTCCCTTGTACAAGAACACTTAGA GGAAAAGAAAAATCAAGCCAAGAATTTGGCACAGTAGCAA CCATACGGGTTGCTACAGTAACAACAAAATAATTCTCTTT TTTTGATTCTTTTGCTATTTTGACGCTATAAGCCTAGTAT ATTGGG |
| Developer | NIVTS |
| Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
| motif | (ac)20a(ta)7 |
|---|---|
| PCR product (bp) | 147 |
| fwd primer | emg21O07/U |
| fwd primer seq. | ctgcaaaacaaaatggccaagtct |
| rev primer | emg21O07/L |
| rev primer seq. | tactgtgccaaattcttggcttga |
| fluor. primer | emg21O07/U_FAM |
| dye | FAM |
| fluor. Primer seq. | FAM-atgcaaaacaaaatggccaagtct |
| PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
| polymerase | Roche Taq |
| Line | allele-1 | allele-2 |
|---|---|---|
| AE-P03 | 148 | 148 |
| EPL-1 | 150 | 150 |
| LS1151 (S.linneanum) | 122 | 122 |
| LS1934 | 148 | 148 |
| LS4021 (S. incanum) | ||
| Nakate Shinkuro | 149 | 149 |
| Senryo 2 | 148 | 148 |
| Shironasu | 148 | 148 |
| WCGR112-8 | 148 | 148 |
| White Egg | 146 | 146 |
| Population | Linkage Group | Position |
|---|---|---|
| NAF2 | NA07 | 69.3 |
| DB | Program | Definition | E-Value |
|---|
| EST Name | Species | Strain |
|---|
