| Crop | eggplant |
|---|---|
| Population | NAF2 |
| Linkage Group | NA06 |
| Marker Type | SSR |
| Map Position | 79.8 |
| Annotation | |
| Source Name | emk01I21 |
| Source Type | genomic |
| Source Sequence | ACAGATAGATTTAAACTATCACAAAATTTTATATGCAGAC AAATTTTGTGAGACACACACAATCCACGTGAGATACACGC ATTCCACATGACAGAGCACGCTAGATACACGCGTCTCACA CGATAGATTGCGTGTCAAATCATGTGAGATTTTTCACATG GGATGTGTGTGTCTATGTGTTACTGACTAGTTAAATGTTA TATTTACATTTATATTATCCTTATTTTATTTTTTGTGTGT GTGTTTTCATATAAACTCATTTAGGAAAATTAGATGAAAA ATTTATGAGATAAAATTATCATTCAATTAAAATACTCATC AAAAACGTTTTTCAATATCATTTTAATGTTTTAAATATCA AAATTTAATTTCTTTAAAGTCAAATGGGAGAAAATACTGC ATCTTTGTTTAATTTTTTCAATTATATAATCACATAATAT TATAAATGCACCAAAAGAGAGAGAGAGAGAGATCTTTAAT TTTTAAATAGAAAAATGTCACGAGCTTTATAACATTGTGT GTTTGAAGTCCATATACGTTGTGTGTTTAAGCCAAGTAAG TCTCTTGATGCTATCACTATTTCAAGAAAAAGAGAATTTT AATAATACCATTTCTATTTTCATGTTTTTTTTTTCTGTAA AGGTTAACATCAGAGTATTTTATGAAATAATTGT |
| Developer | NIVTS |
| Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
| motif | (ta)3atcacataatattataaatgcaccaaa(ag)8 |
|---|---|
| PCR product (bp) | 176 |
| fwd primer | emk01I21/U |
| fwd primer seq. | gtcaaatgggagaaaatactgcatc |
| rev primer | emk01I21/L |
| rev primer seq. | tggcttaaacacacaacgtatatggac |
| fluor. primer | emk01I21/U_PET |
| dye | PET |
| fluor. Primer seq. | PET-atcaaatgggagaaaatactgcatc |
| PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
| polymerase | Roche Taq |
| Line | allele-1 | allele-2 |
|---|---|---|
| AE-P03 | 245 | 245 |
| EPL-1 | 180 | 180 |
| LS1151 (S.linneanum) | 255 | 255 |
| LS1934 | 245 | 245 |
| LS4021 (S. incanum) | 246 | 246 |
| Nakate Shinkuro | 179 | 179 |
| Senryo 2 | 179 | 245 |
| Shironasu | 245 | 245 |
| WCGR112-8 | 245 | 245 |
| White Egg | 245 | 245 |
| Population | Linkage Group | Position |
|---|---|---|
| EW2009 | LG04 | 21.2 |
| NAF2 | NA06 | 79.8 |
| DB | Program | Definition | E-Value |
|---|
| EST Name | Species | Strain |
|---|
