| Crop | eggplant |
|---|---|
| Population | NAF2 |
| Linkage Group | NA06 |
| Marker Type | SSR |
| Map Position | 58.6 |
| Annotation | |
| Source Name | emg11K06 |
| Source Type | genomic |
| Source Sequence | CCATAAGATTAAATAATATTTTAGTTCATTTAATATAAAT GTAATGTATGTCATAATTGAAAAGTTCTTTTTATTTTTTA AAATTTTGTACCTGAAAAATAAAATTGAAGAGTTAAACTG CAACAAAATTAAAATTGAAGTGTGTCAAAATTAAATTTAG AGGTAGGTTAAAAGAAATGGGAATGCATTTGACCTTATGT TTAGTTTGTTTTTTGATGTTGTCTATAGAAAACAAGATTT TTATTTTCTTAAAATGGAGAAAAAAATAGGCTTTTTTTTT TTATCACCACCCGTCTCATTTATTGGATTACTGATTACTG ATGTTGATGTTGGTTGTAATCGTAAATAATGAAAAGAATA AGCCTCAATGTGAAACCTTCTCCTCTATAAATAACAAAGT TCTGATCGAATCCACTAGCTTCCACGTTCTAACTCACTAG CTTCTTTCCTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC TCTCTCTCTCTCTCTCTCTCTCCAAGTTCCTTTCTCTCTC TAAAACCATGCAGATCGGAACGAAACTTCCAAATCTTCAC CCTTTTCAGGCAAAGGGAGTGAACTTTAAGTGCAATGCAC AAACTGTAAAAACATTCTCACCGCCATCATCTACAGAGAT AACGAAAAAGCACATTTCCAATCTGGAAAA |
| Developer | NIVTS |
| Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
| motif | (tc)26caagttcctt(tc)4 |
|---|---|
| PCR product (bp) | 226 |
| fwd primer | emg11K06/U |
| fwd primer seq. | cgaatccactagcttccacgttct |
| rev primer | emg11K06/L |
| rev primer seq. | agatgatggcggtgagaatgtttt |
| fluor. primer | emg11K06/U_FAM |
| dye | FAM |
| fluor. Primer seq. | FAM-agaatccactagcttccacgttct |
| PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
| polymerase | Roche Taq |
| Line | allele-1 | allele-2 |
|---|---|---|
| AE-P03 | 231 | 231 |
| EPL-1 | 237 | 237 |
| LS1151 (S.linneanum) | 194 | 194 |
| LS1934 | 204 | 204 |
| LS4021 (S. incanum) | 198 | 198 |
| Nakate Shinkuro | 237 | 237 |
| Senryo 2 | 204 | 204 |
| Shironasu | 204 | 204 |
| WCGR112-8 | 204 | 204 |
| White Egg | 231 | 231 |
| PI 286106 | 203 | 203 |
| Population | Linkage Group | Position |
|---|---|---|
| N28F2 | E_06 | 84.2 |
| NAF2 | NA06 | 58.6 |
| DB | Program | Definition | E-Value |
|---|
| EST Name | Species | Strain |
|---|
