| Crop | eggplant |
|---|---|
| Population | NAF2 |
| Linkage Group | NA06 |
| Marker Type | SSR |
| Map Position | 55.3 |
| Annotation | |
| Source Name | emf21O06 |
| Source Type | genomic |
| Source Sequence | NNNNNNNNNNNNNNNNNNNNNNNNCTATGGCTTTGAGAGA TTACCTTCTTCCGCTTCATGCTAAGCGTTCTTGTTGTTGA TGGAGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT CTCTCTCTCTGTAAGATGTGTGTGTGTGTGTGTGTGTAGT TTATGGATGATATGCAATCGTGAAAATATTTAAATTTATT CAGTGGTTCATGTTTGGCATTTGATGAAATTAATTGACAT CACTCTCTTAGTTTTGCAATTTATCTTTTCGTGCTATGGA AATTTTTGCCTATTTCTCTTTAAAAACTGGAATTCTTTAT GAATCTTATTCCAGGGTGCATCTCGTGCGTCTCACCAGNN NNNNNNNNNNNNNNN |
| Developer | NIVTS |
| Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
| motif | (ttg)3atggag(tc)22tgtaaga(tg)10 |
|---|---|
| PCR product (bp) | 189 |
| fwd primer | emf21O06/U |
| fwd primer seq. | agattaccttcttccgcttcatgc |
| rev primer | emf21O06/L |
| rev primer seq. | catcaaatgccaaacatgaaccac |
| fluor. primer | emf21O06/U_VIC |
| dye | VIC |
| fluor. Primer seq. | VIC-agattaccttcttccgcttcatgc |
| PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
| polymerase | Roche Taq |
| Line | allele-1 | allele-2 |
|---|---|---|
| AE-P03 | 186 | 186 |
| EPL-1 | 199 | 199 |
| LS1151 (S.linneanum) | 201 | 201 |
| LS1934 | 185 | 185 |
| LS4021 (S. incanum) | ||
| Nakate Shinkuro | 200 | 200 |
| Senryo 2 | 191 | 191 |
| Shironasu | 186 | 186 |
| WCGR112-8 | 185 | 185 |
| White Egg | 186 | 186 |
| Population | Linkage Group | Position |
|---|---|---|
| EW2009 | LG04 | 41.3 |
| N28F2 | E_06 | 78.3 |
| NAF2 | NA06 | 55.3 |
| DB | Program | Definition | E-Value |
|---|
| EST Name | Species | Strain |
|---|
