| Crop | eggplant |
|---|---|
| Population | NAF2 |
| Linkage Group | NA06 |
| Marker Type | SSR |
| Map Position | 55.3 |
| Annotation | |
| Source Name | emd15D09 |
| Source Type | genomic |
| Source Sequence | AAAAATTTCACCTCATATTTATCCACACTCAATATCACAT TCTCTGCCCCTGTGAACACCCCTATGGGTCCATTGGACTC TAATCCTCGGGGCATTATGCCCCAAAATAATATTATGCCC CAACAAATCTTGGGCTATGTGAGCCCAAACTTAAAAGAAA GTAGTCGTAGGTTGCAACACAGAAAAATGGGCAAAGGGTC CATTAACGTAGTACGGTCCAGTTGAACAGAAGCTAGAAAT GGATCTGAGTTTAAGTAATTTTTTTAGGGTAAAATTATGT AACTTGACAAACATATTATTGTAGTTTTAAAAAATTACAA TTTATAGCTATAGTTATGATTCTATTGCTATTATCTCTCT CCTCTCCTCATCTCTCTCGCATCTCTCCTCTCAATCTCTT ATCTCTTGCTACATATACAAATACATATGTGTACCAGTTG GAAGATCTATCTCATGTCTGGTACTGCATGGTTCCTCTGT AAGAACCCTGACTCATTCTCTTGAAGCTCATCCTCTTCAT CATAAGTGATCCGCTTGCCCCGAAATGACCTTGTCACGCC CCGACCCTACACCCTGGACGTGGCCGGCACTCGGAAACCA TTTCTAGTCCCAAGAGAACCACTTGACTGGCTACTTACTC AACGGAAGACTTAACAATGATGGGAAAAAATCATAAAAGC AATAAGATGAGCCAAACTGTCTCCATAACTAAATAAGAAA GC |
| Developer | NIVTS |
| Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
| motif | (tc)4ctctcctca(tc)4gca(tc)3 |
|---|---|
| PCR product (bp) | 292 |
| fwd primer | emd15D09/U |
| fwd primer seq. | aaaatgggcaaagggtccattaac |
| rev primer | emd15D09/L |
| rev primer seq. | ggaaccatgcagtaccagacatga |
| fluor. primer | emd15D09/U_NED |
| dye | NED |
| fluor. Primer seq. | NED-ataatgggcaaagggtccattaac |
| PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
| polymerase | Roche Taq |
| Line | allele-1 | allele-2 |
|---|---|---|
| AE-P03 | 317 | 317 |
| EPL-1 | 296 | 296 |
| LS1151 (S.linneanum) | 318 | 318 |
| LS1934 | 317 | 317 |
| LS4021 (S. incanum) | 318 | 318 |
| Nakate Shinkuro | 296 | 296 |
| Senryo 2 | 317 | 317 |
| Shironasu | 317 | 317 |
| WCGR112-8 | 317 | 317 |
| White Egg | 317 | 317 |
| PI 286106 | 317 | 317 |
| Population | Linkage Group | Position |
|---|---|---|
| EW2009 | LG04 | 41.3 |
| N28F2 | E_06 | 78.8 |
| NAF2 | NA06 | 55.3 |
| DB | Program | Definition | E-Value |
|---|---|---|---|
| TomatoBAC_end | BLASTN | SL_MboI0139J16_SP6_376539 Chromat_file:SL_MboI_139_J16-SP6 SGN_GSS_ID:393750 (vector and quality trimmed) | 2e-37 |
| TomatoBAC_end | BLASTN | SL_MboI0140O09_T7_362405 Chromat_file:SL_MboI_140_O09-T7 SGN_GSS_ID:379616 (vector and quality trimmed) | 2e-37 |
| TomatoBAC_end | BLASTN | SL_MboI0136P20_SP6_361322 Chromat_file:SL_MboI_136_P20-SP6 SGN_GSS_ID:378533 (vector and quality trimmed) | 2e-37 |
| TomatoBAC_end | BLASTN | SL_MboI0142A17_T7_363285 Chromat_file:SL_MboI_142_A17-T7 SGN_GSS_ID:380496 (vector and quality trimmed) | 6e-28 |
| TomatoBAC_end | BLASTN | SL_MboI0142D24_SP6_363442 Chromat_file:SL_MboI_142_D24-SP6 SGN_GSS_ID:380653 (vector and quality trimmed) | 1e-22 |
| EST Name | Species | Strain |
|---|
