| Crop | eggplant |
|---|---|
| Population | NAF2 |
| Linkage Group | NA06 |
| Marker Type | SSR |
| Map Position | 38.9 |
| Annotation | |
| Source Name | EMB0048 |
| Source Type | genomic |
| Source Sequence | AAGCTTCCTTTTTTTCTTGATCCTGACACTGGCAGCGACC TCACGTGGCTGNAATGTGATGCTCCCTGTGTTCGCTGCAC AAGAGTAAAGTCTTAACAATCTTTCTTACTGTTTTTACAA CTCATTTTTATGCTAGTTCAATACAAGAGCACTCAAATTA GTTTTTATGTAGTTTGGGTTCCTCATAATTGTAATGGCTT ATTACTATCTCAAATTAAATGATCATTGCAATCTCATGGA GTAGTGTTCTATCATTGGATTCAACCTCTATATATCAAGT GCTCAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG AGGGAGAGAGAGAGAGAGGGAGAGAGAGAGAGAGAGAGAG AGAAGAGTTGGCTCTATCAAAATTCACTCTCCATATTTCC ANAGAACNATCATGTTNAANANATTNTTTGATAATTGAGA GATAATTCTCCTGACTTTTGCTTTTCCCAANTAAATGCCC CTGGTTTAACNANNTGTTGATGGGATCCATTTTGAAACTC GGGTGCTTTTGATAATTAACTTTGNACAAAATTTCCTATT TATGGAAGACNTTTNTCATCCCNNCNNCTTTGTACNTGNA GGCNCCTCANNCATTNTANAAACCCAACAANGNCCCTGNG CCATGCCAAGGACCCTTTNTGTGCCTTCTTNNNCCAATGC TGTTAACNAANGTGCANANTTCCCAAANNANGGTGNCCTT NNANGTTCCANCCCCNCGGCACTCATCGGCCCNNACNCTG CNNTNCCNNTGNNGNACNTANGGNTTTCCCCTCNCANAAN TCNCCNCNCCNAACCTTNCCCNANCCNGGCTNNNCCNTNA AANANNNTCAANNCCCCTGGGGGNCGCCCCCAAAGTNCNN GCNCNNNTACNTCTCNANATTNNNCTGNNNTCNTNNNCNT NCCNCNNNCCCCNNNTTCNCCC |
| Developer | NIVTS |
| Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
| motif | (AG)18G(GA)7GG(GA)12 |
|---|---|
| PCR product (bp) | 247 |
| fwd primer | |
| fwd primer seq. | tcattgcaatctcatggagtagtgttc |
| rev primer | EMB0048pt |
| rev primer seq. | gtttgggaaaagcaaaagtcaggagaa |
| fluor. primer | |
| dye | FAM |
| fluor. Primer seq. | FAM-TCATTGCAATCTCATGGAGTAGTGTTC |
| PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
| polymerase | Roche Taq |
| Line | allele-1 | allele-2 |
|---|---|---|
| PI 286106 | 249 | 249 |
| Population | Linkage Group | Position |
|---|---|---|
| EW2009 | LG04 | 71.2 |
| N28F2 | E_06 | 49.4 |
| NAF2 | NA06 | 38.9 |
| DB | Program | Definition | E-Value |
|---|
| EST Name | Species | Strain |
|---|
