| Crop | eggplant |
|---|---|
| Population | NAF2 |
| Linkage Group | NA04 |
| Marker Type | SSR |
| Map Position | 32.8 |
| Annotation | |
| Source Name | emi06D05 |
| Source Type | genomic |
| Source Sequence | TAGGCCTTGCTAGCAGAAGCCTAAGATTTTTTTTAAGGGA GTTCAAAATTATAAGAAGTAGACACATGAAGAAATTAAAG AGGAGGGGGGTCGATATATATTATATATACATAAAAAAAA AATTTTACTAATATATAAATAATATAATTTTTCGTCCAAG GGGTTCAGATGTTACTACGTGGTTTCGCCATTGCTACTAG GGACCAAACCAGATAGGATCGACAAACCCCCTTCGACATT AAATTTGTTTGTACATATATGTACCTCTTCATATTTTTAT ACTCATTAATGAAAATCCCGACTTTGGCACTAACCCCCAC ACATACACACACACACACACACATATATATATATATATAT ATATATGATCATTTCTTAATTCCTTCTACATGATATATCT CGTGAATGGCTTTTAATTCACCACCAAAAACCAAAACGGT GAGTAAATAAATGCTACCACCAAATGACCAAAATTATACA GAGCAACCTCTGCTTCTTCTCTTTAGCATTTCATCAAACA CTCTGTGTGCATTCTTGAAAACCAAAAAAATGGAATCAG |
| Developer | NIVTS |
| Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
| motif | (ca)3t(ac)9a(ta)11tgatcatttcttaattccttctacatg(at)3 |
|---|---|
| PCR product (bp) | 299 |
| fwd primer | emi06D05/U |
| fwd primer seq. | atttttcgtccaaggggttcagat |
| rev primer | emi06D05/L |
| rev primer seq. | tactcaccgttttggtttttggtg |
| fluor. primer | emi06D05/U_PET |
| dye | PET |
| fluor. Primer seq. | PET-atttttcgtccaaggggttcagat |
| PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
| polymerase | Roche Taq |
| Line | allele-1 | allele-2 |
|---|---|---|
| AE-P03 | 322 | 322 |
| EPL-1 | 303 | 303 |
| LS1151 (S.linneanum) | 277 | 277 |
| LS1934 | 301 | 301 |
| LS4021 (S. incanum) | 275 | 275 |
| Nakate Shinkuro | 298 | 298 |
| Senryo 2 | 296 | 296 |
| Shironasu | 326 | 326 |
| WCGR112-8 | 326 | 326 |
| White Egg | 320 | 320 |
| Population | Linkage Group | Position |
|---|---|---|
| LW2010 | E_04 | 17.0 |
| LWA2010 | LWA_04 | 20.661 |
| LWAE2012 | E_04 | 19.052 |
| LWF2_2022 | E_04 | 23.1 |
| NAF2 | NA04 | 32.8 |
| DB | Program | Definition | E-Value |
|---|
| EST Name | Species | Strain |
|---|
