| Crop | eggplant |
|---|---|
| Population | NAF2 |
| Linkage Group | NA02.1 |
| Marker Type | SSR |
| Map Position | 1.2 |
| Annotation | |
| Source Name | emf01D24 |
| Source Type | genomic |
| Source Sequence | CTACTACGCTTTCTTATTATATCTTTTTTTGTTATTTTAA CTTACTATTATAATCCCCTTTTGACTTGTTTATTTTGTAG TAATTATATTTTGTTAATTCTTGTATCCTCTAAGTATTTA GAGAAGGCTTGTTAATCCAGGAAAAATATTTCACATTGCT GAAATAGTTTCTTAGTACAGTGCCCAACACGATTCAAGTG TTGTTTTACACACACACACACACACACACACACACACACA CATATATATATATGTACTATTCAAAATATTATTGTAGTAA TATTTATCTAAATTTCCTTGATTATTTTGACTTATTATGT AACACCCCCTTAATTTCCATCTATCTGATTTGGATAAGTA |
| Developer | NIVTS |
| Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
| motif | (ac)17a(ta)5 |
|---|---|
| PCR product (bp) | 174 |
| fwd primer | emf01D24/U |
| fwd primer seq. | gtacagtgcccaacacgattcaag |
| rev primer | emf01D24/L |
| rev primer seq. | tcagatagatggaaattaagggggtg |
| fluor. primer | emf01D24/U_PET |
| dye | PET |
| fluor. Primer seq. | PET-atacagtgcccaacacgattcaag |
| PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
| polymerase | Roche Taq |
| Line | allele-1 | allele-2 |
|---|---|---|
| AE-P03 | 179 | 179 |
| EPL-1 | 177 | 177 |
| LS1151 (S.linneanum) | 168 | 168 |
| LS1934 | 177 | 177 |
| LS4021 (S. incanum) | 171 | 171 |
| Nakate Shinkuro | 175 | 175 |
| Senryo 2 | 177 | 177 |
| Shironasu | 177 | 177 |
| WCGR112-8 | 181 | 181 |
| White Egg | 177 | 177 |
| Population | Linkage Group | Position |
|---|---|---|
| EW2009 | LG08 | 6.5 |
| NAF2 | NA02.1 | 1.2 |
| DB | Program | Definition | E-Value |
|---|---|---|---|
| TomatoBAC_end | BLASTN | SL_EcoRI0008E04_SP6_290388 Chromat_file:SL_EcoRI_008_E04-SP6 SGN_GSS_ID:307214 (vector and quality trimmed) | 1e-11 |
| TomatoBAC_end | BLASTN | SL_MboI0141K03_SP6_362968 Chromat_file:SL_MboI_141_K03-SP6 SGN_GSS_ID:380179 (vector and quality trimmed) | 8e-07 |
| EST Name | Species | Strain |
|---|
