| Crop | eggplant |
|---|---|
| Population | ALF2 |
| Linkage Group | AL01 |
| Marker Type | SSR |
| Map Position | 147.3 |
| Annotation | |
| Source Name | emg21K22 |
| Source Type | genomic |
| Source Sequence | GGTTCCATCAAGATAACCAAAAGGTTGTAGCCATACATAA GCATGGAGAATTGGGCTTTCCATGTAGCAAAATTGCGACT GCCGCTGAGTTTAATGGGTAATTGGGAAGTAGGATTGAAT TGAATAATGATGTTGGTACCTGTTGTGTTGTCAGCACTAA CAACTCTGGGATTGTCGTTTCCATTTTGATGAGTCATTGT TGTTGATCTGCTGATATGCGTGAGAGACGCATAGAAGAGG GCAAAAAATCGTTCTTTCTTGTTGGAGCGTATAGAGATCT GATACCATATTAGCACCGAGTAAGTGTTGAAAGAAGATGC TTTATTAATGAATGTAGAAAGTGTATTAAATAGAATTACA GAGAATATAAATAAACAATGATTGTTAAACTAAGTACTGC AGAGTCCTAAATAAATGAGACTAACATGGCTGAGTGCCAA TAGTGTGCATCCAAAGGATAGTGGCTGCGGATTCCCCTGT TGTAAATACACACACACACACACACACACACACACACACA TATATATATATTAGAAACTTGAAACATACCCATCGAAGTC CCACAAAGTAGGGTTTGGGGAGATTTTGTTTGTCCTGAAA TGTCTACATCATGAAATCTTTATATCTTGCCTTAGGCACT CTTCAGTTAGTATCATACTTGTACCATCTTTTAATCTTGT TCGGTCTTTTGAAATATTAGATATTGAAAATATTGAACCT GAAGCCCTTTGTTATATTTTAGTTCGGGTGTGTGGTACTC AAATTCTTGGAAACAATCTTGCAACTAACTTCTGATGGCT CTTCAATTTATTTATGAGGTGATTTTACTCTTCCAAATAT TGCAATCTATAGTAGATTTGAGTCATATCTTGTACTGTAG TCATAGTTTAGGAAATAATATTAGAGAAGAACTGTTTTAG GAAGTCAGTTAGTCTCCTCGAAGATTGAGTTTAAAGTTCT ACTACAATTTATGTTAATTCTATTTTGCGGGCTTCTGCTA GCAAGGCCT |
| Developer | NIVTS |
| Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
| motif | (ac)16a(ta)5 |
|---|---|
| PCR product (bp) | 161 |
| fwd primer | emg21K22/U |
| fwd primer seq. | gagactaacatggctgagtgccaa |
| rev primer | emg21K22/L |
| rev primer seq. | caaaccctactttgtgggacttcg |
| fluor. primer | emg21K22/U_FAM |
| dye | FAM |
| fluor. Primer seq. | FAM-atgactaacatggctgagtgccaa |
| PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
| polymerase | Roche Taq |
| Line | allele-1 | allele-2 |
|---|---|---|
| AE-P03 | 161 | 161 |
| EPL-1 | 165 | 165 |
| LS1151 (S.linneanum) | 168 | 168 |
| LS1934 | 165 | 165 |
| LS4021 (S. incanum) | 147 | 147 |
| Nakate Shinkuro | 165 | 165 |
| Senryo 2 | 161 | 161 |
| Shironasu | 161 | 161 |
| WCGR112-8 | 157 | 157 |
| White Egg | 155 | 155 |
| Population | Linkage Group | Position |
|---|---|---|
| AL2010 | E_01 | 166.3 |
| ALF2 | AL01 | 147.3 |
| EW2009 | LG03 | 0.0 |
| LW2010 | E_01 | 167.0 |
| LWA2010 | LWA_01 | 140.475 |
| LWAE2012 | E_01 | 138.285 |
| LWF2_2022 | E_01 | 8.2 |
| NAF2 | NA01 | 144.5 |
| DB | Program | Definition | E-Value |
|---|---|---|---|
| TomatoBAC_end | BLASTN | SL_MboI0003E22_SP6_144535 Chromat_file:SL_MboI_3_E22-SP6 SGN_GSS_ID:161365 (vector and quality trimmed) | 1e-23 |
| TomatoBAC_end | BLASTN | LE_HBa0179K20_SP6_125434 Chromat_file:LE_HBa_179_K20-SP6 SGN_GSS_ID:142786 (vector and quality trimmed) | 7e-16 |
| TomatoBAC_end | BLASTN | SL_MboI0134O05_T7_381597 Chromat_file:SL_MboI_134_O05-T7 SGN_GSS_ID:398791 (vector and quality trimmed) | 1e-11 |
| TomatoBAC_end | BLASTN | LE_HBa0026O23_T7_137026 Chromat_file:LE_HBa_026_O23-T7 SGN_GSS_ID:153857 (vector and quality trimmed) | 3e-09 |
| TomatoBAC_end | BLASTN | SL_MboI0050M08_T7_153808 Chromat_file:SL_MboI_50_M08-T7 SGN_GSS_ID:170635 (vector and quality trimmed) | 4e-08 |
| EST Name | Species | Strain |
|---|
