| Crop | eggplant |
|---|---|
| Population | ALF2 |
| Linkage Group | AL01 |
| Marker Type | SSR |
| Map Position | 125.6 |
| Annotation | |
| Source Name | CHX02H03W |
| Source Type | EST |
| Source Sequence | GGGGAACAACATTGTTACGGAGGAGGTGGAGCCAAAAGAA TAAGTCAAAAACTCCGTGTTTCCATGTCTAATATGATGGC AGCTTCGTAGAACCAGGCACAGTTGGATACTGCTCACGTA GTGACCAATATACTATGTGTGACCTCCCAATAAACTATTT TTCTTAGTGCTAATAAAGTATATGCACACCACCTTTTTTA TATTTTGTTTTCCCCTTTTCTCCTACCTGTTCTCTCTCTC TCTGTGGGGTTTGTTGAACTACATTTAATGTTGGGTTTTG AGTCCGGATGAGAAAGATAGAGACTTGTGGTAGATACAGA TGATGATTTTTAAAAAGAAAAATGTTTCTTGCCTCTGACC CACTTTTCCTTTCTTGATCTACTGATCTTCTCTCTGAAAT TCTTGGTTTCTTGCTGTTGTTCTTCTTCCTTTAAGGTACA GATCTCTGATCTCTGATCTATNNNNNCATCTCTTTCTCAA AGTCACTCGATCATTCAACGGAGTTCAGTAGTGCGAGATT TTCTGATATTGGTGGAGGATCAACTAATGAGGAAGATGAT GGCAAGGGGAAACCACTGGTCCTAAAGAACAAGGCGCCAC GATGGCATGAACAACTGCAGTGCTGGTGCCTGAATTTCCG AGGACGTGTGACAGTTGCATCTGTCAAGAACTTTCAGTTG ATCGTTGCCACTCAACAACCTGCTGCTGGACCAACAACCT TTCAGCCAACAAGCCAATCAGACCATGACAAAATCATCTT GCAATTCGGGAAAGTAGGCAAAGATATGTTTACCATGGAC TACCGGTATCCCCTATCTGCATTTCAAGCCTTTGCCATTT GCTTGAGCAGCTTTGACACAAAATTGGCTTGTGAATAGAG CTAAATTGCTAAACACTCTTACATTTAGGGTGCTAAAATT ATTAACTGTAATGCTTCTATTCTGGATTTATTGTAGTACT TTTTTCTTTTCATC |
| Developer | NIVTS |
| Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
| motif | (tc)6 |
|---|---|
| PCR product (bp) | 216 |
| fwd primer | ecm060/U |
| fwd primer seq. | tatgatggcagcttcgtagaacca |
| rev primer | ecm060/L |
| rev primer seq. | ccggactcaaaacccaacattaaa |
| fluor. primer | ecm060/U_FAM |
| dye | FAM |
| fluor. Primer seq. | FAM-attgatggcagcttcgtagaacca |
| PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
| polymerase | Roche Taq |
| Line | allele-1 | allele-2 |
|---|---|---|
| AE-P03 | 221 | 221 |
| EPL-1 | 220 | 220 |
| LS1151 (S.linneanum) | 219 | 219 |
| LS1934 | 220 | 220 |
| LS4021 (S. incanum) | 222 | 222 |
| Nakate Shinkuro | 222 | 222 |
| Senryo 2 | 219 | 221 |
| Shironasu | 219 | 219 |
| WCGR112-8 | 219 | 219 |
| White Egg | 219 | 219 |
| Population | Linkage Group | Position |
|---|---|---|
| AL2010 | E_01 | 143.0 |
| ALF2 | AL01 | 125.6 |
| LWA2010 | LWA_01 | 120.727 |
| LWAE2012 | E_01 | 119.71 |
| DB | Program | Definition | E-Value |
|---|
| EST Name | Species | Strain |
|---|
