+Marker Data: AFAA06C01

Crop bunching_onion
Population SaT03
Linkage Group 5b
Marker Type SSR
Map Position 53.0
Annotation
Source Name AB564881
Source Type genomic
Source Sequence
Developer NIVTS
Document Tsukazaki et al. (2011) Theor Appl Genet 122:501-510

motif (ac)5aaaaacatacat(ac)11aa(ac)3(at)3
PCR product (bp) 250
fwd primer AFAA06C01-U
fwd primer seq. atggtactcactgatttaatggcataat
rev primer AFAA06C01-L
rev primer seq. gtttctttaatgatgaatctgttgcatacg
fluor. primer
dye
fluor. Primer seq.
PCR condition 94C_2min->(94C_30s->65C_30s,-1C/cyc->72C_30s)x10->(94C_30s->55C_30s->72C_30s)x35->72C_4min->10C
polymerase Toyobo rTaq DNA polymerase
Genebank No. AB564881
annotation
similar marker
product size in J 240
product size in Kaizuka-Wase 230
product size in Iki-White 250+300
product size in Tender Pole

Line allele-1 allele-2
C1s-11s-25s-7 250 250
Cho1s-1s-2s-2s-8s 274 274
D1s-15s-10s-8 245 245
F1s-7s-17s-3s-1 250 250
J1s-14s-23s-9 245 250
K1s-5s-2s-2s-4s-5 278 278
Chiang_mai 232 232
Kaizuka_Wase

Population Linkage Group Position
KiCF2 5a 18.8
SaT03 5b 53.0

DB Program Definition E-Value

EST Name Species Strain