| Crop | bunching_onion |
|---|---|
| Population | SaT03 |
| Linkage Group | 5b |
| Marker Type | SSR |
| Map Position | 85.6 |
| Annotation | |
| Source Name | AB564879 |
| Source Type | genomic |
| Source Sequence | |
| Developer | NIVTS |
| Document | Tsukazaki et al. (2011) Theor Appl Genet 122:501-510 |
| motif | (ta)3cg(tg)3ttagtatgca(ta)8t(ac)12 |
|---|---|
| PCR product (bp) | 239 |
| fwd primer | AFAA05H11-U |
| fwd primer seq. | ataacgttgtggcctctttagcat |
| rev primer | AFAA05H11-L |
| rev primer seq. | gtttcatgttctcccttcatttcgtga |
| fluor. primer | |
| dye | |
| fluor. Primer seq. | |
| PCR condition | 94C_2min->(94C_30s->65C_30s,-1C/cyc->72C_30s)x10->(94C_30s->55C_30s->72C_30s)x35->72C_4min->10C |
| polymerase | Toyobo rTaq DNA polymerase |
| Genebank No. | AB564879 |
| annotation | |
| similar marker | |
| product size in J | |
| product size in Kaizuka-Wase | |
| product size in Iki-White | |
| product size in Tender Pole |
| Line | allele-1 | allele-2 |
|---|---|---|
| C1s-11s-25s-7 | ||
| Cho1s-1s-2s-2s-8s | 236 | 236 |
| D1s-15s-10s-8 | 234 | 234 |
| F1s-7s-17s-3s-1 | ||
| J1s-14s-23s-9 | 236 | 236 |
| K1s-5s-2s-2s-4s-5 | 238 | 238 |
| Chiang_mai | - | - |
| Kaizuka_Wase |
| Population | Linkage Group | Position |
|---|---|---|
| KiCF2 | 5b | 107.9 |
| SaT03 | 5b | 85.6 |
| DB | Program | Definition | E-Value |
|---|
| EST Name | Species | Strain |
|---|
