+Marker Data: AFA16E11

Crop bunching_onion
Population SaT03
Linkage Group 5b
Marker Type SSR
Map Position 33.4
Annotation
Source Name AB564840
Source Type genomic
Source Sequence
Developer NIVTS
Document Tsukazaki et al. (2007) Euphytica 157:83-94

motif (tg)3tatgtatgta(tg)6tatgtatatgtata(tg)5tc(ta)4tccg(tg)3caga(tg)4
PCR product (bp) 197
fwd primer AFA16E11-U
fwd primer seq. attgcgtagacatgagggcacaat
rev primer AFA16E11-L
rev primer seq. gtttcacaaacatgagaaatacgttggca
fluor. primer
dye
fluor. Primer seq.
PCR condition 94C_2min->(94C_30s->65C_30s,-1C/cyc->72C_30s)x10->(94C_30s->55C_30s->72C_30s)x35->72C_4min->10C
polymerase Toyobo rTaq DNA polymerase
Genebank No. AB564840
annotation
similar marker
product size in J 200
product size in Kaizuka-Wase 200+210
product size in Iki-White 200
product size in Tender Pole

Line allele-1 allele-2
C1s-11s-25s-7 186 186
Cho1s-1s-2s-2s-8s 205 205
D1s-15s-10s-8 186 186
F1s-7s-17s-3s-1 186 186
J1s-14s-23s-9 186 186
K1s-5s-2s-2s-4s-5 203 203
Chiang_mai 189 189
Kaizuka_Wase

Population Linkage Group Position
KiCF2 5b 66.0
SaT03 5b 33.4

DB Program Definition E-Value

EST Name Species Strain