+Marker Data: AFS103

Crop bunching_onion
Population SaT03
Linkage Group 1b
Marker Type SSR
Map Position 95.9
Annotation
Source Name AB696903
Source Type genomic
Source Sequence
Developer NIVTS
Document Ohara et al. (2005) Euphytica 144:255-263

motif (ta)9(tg)9(ta)3cttgaccac(at)3
PCR product (bp) 209
fwd primer AFS103-F
fwd primer seq. ttttacctagatattttcgaatttca
rev primer AFS103-R
rev primer seq. catctttctttttcactagcttcctg
fluor. primer AFS103-F(PET)
dye PET
fluor. Primer seq. PET-ttttacctagatattttcgaatttca
PCR condition 94C_2min->(94C_30s->60C_30s,-1C/cyc->72C_30s)x10->(94C_30s->50C_30s->72C_30s)x35->72C_4min->10C
polymerase Toyobo rTaq DNA polymerase
Genebank No.
annotation
similar marker
product size in J 220
product size in Kaizuka-Wase
product size in Iki-White
product size in Tender Pole

Line allele-1 allele-2
C1s-11s-25s-7 255 257
Cho1s-1s-2s-2s-8s 227 227
D1s-15s-10s-8 209 209
F1s-7s-17s-3s-1 211 211
J1s-14s-23s-9 239 239
K1s-5s-2s-2s-4s-5 255 255
Chiang_mai
Kaizuka_Wase

Population Linkage Group Position
KiCF2 1b 15.9
P1 J05 65.9
P2 D05-2 43.7
SaT03 1b 95.9

DB Program Definition E-Value

EST Name Species Strain