+Marker Data: AFA23G01

Crop bunching_onion
Population SaT03
Linkage Group 1b
Marker Type SSR
Map Position 78.4
Annotation
Source Name AB564861
Source Type genomic
Source Sequence
Developer NIVTS
Document Tsukazaki et al. (2011) Theor Appl Genet 122:501-510

motif (ta)8(tg)14cgc(at)3gtagatcatatgtatg(ta)3tggatgtttatt(tg)4
PCR product (bp) 262
fwd primer AFA23G01-U
fwd primer seq. attcatttccatcacctccatgtc
rev primer AFA23G01-L
rev primer seq. gtttaagggctaaggtttctcttcctaca
fluor. primer
dye
fluor. Primer seq.
PCR condition 94C_2min->(94C_30s->65C_30s,-1C/cyc->72C_30s)x10->(94C_30s->55C_30s->72C_30s)x35->72C_4min->10C
polymerase Toyobo rTaq DNA polymerase
Genebank No. AB564861
annotation
similar marker
product size in J 270
product size in Kaizuka-Wase 230+250
product size in Iki-White 250+270
product size in Tender Pole

Line allele-1 allele-2
C1s-11s-25s-7 248 266
Cho1s-1s-2s-2s-8s 244 244
D1s-15s-10s-8 274 274
F1s-7s-17s-3s-1 266 266
J1s-14s-23s-9 272 272
K1s-5s-2s-2s-4s-5 254 254
Chiang_mai 217 217
Kaizuka_Wase

Population Linkage Group Position
KiCF2 1b 33.8
SaT03 1b 78.4

DB Program Definition E-Value

EST Name Species Strain