+Marker Data: AFS099

Crop bunching_onion
Population P2
Linkage Group D05-1
Marker Type SSR
Map Position 21.8
Annotation
Source Name AB499325
Source Type genomic
Source Sequence
Developer NIVTS
Document Song et al. (2004) Breed Sci 54:361-365

motif (ac)13a(ta)7tcacacttata(at)3
PCR product (bp) 237
fwd primer AFS099-F
fwd primer seq. tgcccctcattaataacaacatgac
rev primer AFS099-R
rev primer seq. ttaatcgcattgacaaagtttattt
fluor. primer AFS099-F(PET)
dye PET
fluor. Primer seq. PET-tgcccctcattaataacaacatgac
PCR condition 94C_2min->(94C_30s->60C_30s,-1C/cyc->72C_30s)x10->(94C_30s->50C_30s->72C_30s)x35->72C_4min->10C
polymerase Toyobo rTaq DNA polymerase
Genebank No. AB499325
annotation
similar marker
product size in J 240
product size in Kaizuka-Wase
product size in Iki-White
product size in Tender Pole

Line allele-1 allele-2
C1s-11s-25s-7 231 239
Cho1s-1s-2s-2s-8s 245 245
D1s-15s-10s-8 243 243
F1s-7s-17s-3s-1 241 241
J1s-14s-23s-9 229 229
K1s-5s-2s-2s-4s-5 235 235
Chiang_mai
Kaizuka_Wase

Population Linkage Group Position
DJF2 Chr1b 53.5
FA 1b 27.2
KiCF2 1b 81.2
P1 J05 23.5
P2 D05-1 21.8

DB Program Definition E-Value

EST Name Species Strain