+Marker Data: AFAT11A02

Crop bunching_onion
Population KiCF2
Linkage Group 6a
Marker Type SSR
Map Position 59.4
Annotation
Source Name AB564928
Source Type genomic
Source Sequence
Developer NIVTS
Document Tsukazaki et al. (2011) Theor Appl Genet 122:501-510

motif (ta)3tc(tg)3tatgc(at)3(gc)6(ac)4agagatacgtatgttgacatgtg(at)4cta(tg)4tt(tg)8
PCR product (bp) 153
fwd primer AFAT11A02-U
fwd primer seq. agcgcgcacacacacagagatac
rev primer AFAT11A02-L
rev primer seq. gtttccgctcttttatccttatatttctaattggtt
fluor. primer
dye
fluor. Primer seq.
PCR condition 94C_2min->(94C_30s->65C_30s,-1C/cyc->72C_30s)x10->(94C_30s->55C_30s->72C_30s)x35->72C_4min->10C
polymerase Toyobo rTaq DNA polymerase
Genebank No. AB564928
annotation
similar marker
product size in J 180
product size in Kaizuka-Wase
product size in Iki-White 170
product size in Tender Pole

Line allele-1 allele-2
C1s-11s-25s-7 229 229
Cho1s-1s-2s-2s-8s 232 232
D1s-15s-10s-8 227 227
F1s-7s-17s-3s-1 229 229
J1s-14s-23s-9 229 229
K1s-5s-2s-2s-4s-5 226 230
Chiang_mai 231 234
Kaizuka_Wase

Population Linkage Group Position
FA 6a 52.7
KiCF2 6a 59.4
SaT03 6a 17.8

DB Program Definition E-Value

EST Name Species Strain