+Marker Data: es801TC3547

Crop pepper
Population KL-DH
Linkage Group KL07
Marker Type SSR
Map Position 26.26
Annotation
Source Name TC3547
Source Type misc cDNA
Source Sequence GCACGAGGACAACAAAAAAGCCCATTCATTCTCTTGTTGT TCTCTTTTATTTTTTTCTTCACCAAACCCTAAATTAATTC GAGAATAAAATCTCCAATTTTATTTTTTTTCTGAGAGGAA ATTTATCTAGGGAATGCAGAGAGATGAGAGGCTCTCGGTT TTCTAATCCCCTTTTTGGATTCGGAAAAATCCAAAAATCT GTTACCGGCGGCAGAAACTGCCATCGGAAACACGTTGAAG ACGGGTGAACCAATCACCCGTTTTCGCCTTTTTCGTCCTC CACTTTTTTTTTCACAAAAAGACAACCCTTCCCCCCCTTC CCCCCAAACCTCTTTTTCAACTCAAAAAGCAAAAAAACGA AAAAAACCTTCTAGTCAGTCCCGAAAAGAATGGCACCAGA AGAAAGATGTGCAGCTTTGCATGGAAAATACGAACTCGGC CGCCTTTTAGGTCACGGAACGTTTGCGAAAGTGTACCATG CACGTAACGTGCAAAATGGGAAAAATGTAGCAATCAAAGT TGTGGGCAAAGAGAAAGTAATCAAAGTAGGTATGATGGAA CAAATCAAAAGAGAAATCTCCATCATGAAGATGGTGAAAA ATATGAATATAGTCGAGCTCCACGAAGTCATGGCAAGTAA AACGAAGATTTACTTCGCCATGGAGTACGTTAAGGGAGGT GAACTCTTCGCGAAGATCGCAAAGGGAAGGCTCAGAGAGG ACGTAGCTCGAGGGTATTTTCAACAACTGATATCCGCCAT CGACTTCTGCCACAGCAGAGGCGTATACCACCGCGATTTA AAGCCGGAGAATCTGTTGCTTGACGATGCAGGTAACCTTA AAGTTACAGATTTCGGGTTAAGTGCATTCACAGATCACTT AAGACAAGATGGTTTGTTACACACAACATGTGGAACACCA GCATATGTTGCACCAGAAGTTATTGGTAAGAAGGGATATG ATGGTTCAAAAGCTGATATTTGGTCATGTGGGGTTATACT TTATGTGTTGCTAGCTGGTTTTTTACCATTTCAAGATGAG AATATAATGGCTATGTACAAGAAGATTTATAGAGGTGACT TCAAATGTCCACCATGGTTTTCATCAGAGTCGAGAAAACT CATCATGAAGATGTTGGAACCGAACCCTAATTCAAGGATA ACAGCATCGAAGATAATGGATTCGTCATGGTTCAAGAAGT CAGTGCCGAAGACATTAAGGCACAGAGAAGAAGAAGAAGA AGAAGAAGAAGAATTTGGCTTAGCCTCAGAAAAGGTTAAA GAATTAGAGACAATGAATGCATTTCACATCATTTCGCTAT CTGAGGGTTTTGATTTATCACCATTGTTCGAGGAGAAGAA GAGGGACGAGAAGGATCAGATGAGATTCGCGACTACTAGG TCAGCTAGCAGTGTGATATCGAAGCTAGAAGAGGTAGCAA AAACACGAAACTTCAGTGTGAAAAAGAGTGATTCATCTGT GAGATTACAAGGACAAGAGATTGGGAGGAAAGGCAAATTG GGAATTGCTGCTGATATATTTGCTATAACGAATTCGTTCG TCGTAGTTGAAGTGAACAAAGCAAGCGGTGATACGTTGGA ATACAATCAATTCTGCAGCAAAGAACTTAGACCTGCATTA AAGGACATTGTTTGGACAACAACAAAATAGAGAATTGATC TACACTTGGTTGAAGATAAATAAGGTGTAGATTATTACTT GGTAATTTTATTAGTTTTGATGTTGTTAAGTAGATTTTTA TTAAGTAGAGGTTGAATTCTTATCAAGATAAGTTTCTTGA ATTGTGAATGTATTTTGTGTTTTTTTGGCAATTTGCATCT ACTTTTTGTTGTTAAACCTCGTGC
Developer Dana-Farber CI/Harvard SPH
Document
old source name pepper|TC3547
typing_method 13% PAGE
motif (AGA)9
PCR product (bp) 262
fwd primer
fwd primer seq GATGTTGGAACCGAACCCTA
rev primer
rev primer seq CGCGAATCTCATCTGATCCT
PCR condition 95C_1min->(94_30s->55C_30s->72C_1min)x35->72_5min->4C
polymerase Native Taq
comments QV: estimated by sequencer
Line allele-1 allele-2
K9-11 251.9 251.9
MZC-180 (selfed LS2341) 263.7 263.7
Population Linkage Group Position
KL-DH KL07 26.26
KL-DH_2024 KL07 26.26
KL-DH_2024_R2 KL07 26.26
DB Program Definition E-Value
EST Name Species Strain