+Marker Data: est_sep01g15

Crop eggplant
Population AL2010
Linkage Group E_09
Marker Type SNP
Map Position 75.5
Annotation
Source Name SEP01G15
Source Type 16k_SmUnigene
Source Sequence
Developer NIVTS
Document

Typing_Method Tm-Shift
Marker_Class EST-misc
STS_primer_fwd AACCGCAGCTCACAGACATATCAC
STS_primer_rev CGAGATGTGAGCTACAGGATAGTTGC
amplicon_seq GTTATCTACAGGATAGTTGCCGGTGGGTATTCTTGGAGAGATTTGTTTCATCCCAACAAACCTAGTAGAGCGGCATTTACTGACTTTAGCTCCTGCATTAGAGGGTTGTGCATCACAGATAGTGAACTTTGTCCCGAGGAAGTTAGATCTGTTACAAAGTTCAGCAAGGGGAAAGTAGTCAGCAAGACGACCATGAAGTAGCAAATGACATACTAGCGCGACAAACCTCAGCTTCCCAATGTAGGTGCTGCTACCCTTGGAAACATCTTCAGCATTTAAAGAAATGATGTAATCTGTGTGTGTTGGCCTTTTACACTTCCGAGCAGCAAGAAGGAACTTACCATCATCATTAACAGCTGTATGAAAACCCAAGTAGTGAAGGTCAGTGCAATATCACTTAGCCTGAATAATGTAAGCAAGAAATCCTACAGAGGTGCGGTATAAGCAAACGAAGCCTCTAATTGTACCAAAAGATACACTGAAAAGGAAAATATAGAAGGAGGGTGCTTAATACATCTAGAAAGAAAGAAGTGAAAATGAAATAAATCCTTATTCACCTTCATTTAGATTAAGGAAGAGGTGATATGTCTG
SNP_position 516
allele_1 T
allele_2 C
ASP_primer_S GCGGGCTTTCATTTTCACTTCTTTCTTTCTAGA
ASP_primer_L GCGGGCAGGGCGGCTTTCATTTTCACTTCTTTCTTTCTCGG
Common_primer GAAAAGGAAAATATAGAAGGAGGGTGC
enzyme Native Taq
dye SYBR Green I

Line allele-1 allele-2
AE-P03 C C
LS1934 T T
WCGR112-8 C C

Population Linkage Group Position
AL2010 E_09 75.5
LW2010 E_09 66.8
LWA2010 LWA_09 72.395
LWAE2012 E_09 56.356
LWF2_2022 E_09 80.1

DB Program Definition E-Value

EST Name Species Strain