+Marker Data: est_ovs04m20

Crop eggplant
Population AL2010
Linkage Group E_02
Marker Type SNP
Map Position 62.4
Annotation
Source Name OVS04M20
Source Type 16k_SmUnigene
Source Sequence
Developer NIVTS
Document

Typing_Method Tm-Shift
Marker_Class EST-misc
STS_primer_fwd gaagcaaggaatcacaggtcctaa
STS_primer_rev gcaaaccatcaccttcaagcttct
amplicon_seq NNNNNNNNAAGAAATAATTTGATTTTGACTTTGCAAACGAAATATCTCCTAATGTGGTTACTTTATTCATTGACAATGTGGAATCTCTAGAGTCCTGGTCCTTTACTTAAAATTCTGCTAATAAATTATCGTCTTGACATTTGATGTAGCTATTCCTAGTTTGACTACTAATTGTTTAATGGAGCCAATGCAATTAGACAGAAATCTGTTTTTATCGATTCACTTGTGACTAACTTTTCCTTGATTTCTTGATTCCTATGATTGATCCCATATTCTGAATAGTGCCCCTTTAAGAGGGCTTTGGAGATGAAAGGAGAAAAAACTAATGAATGTATATTGCTTCTGTTATTTTTTGGTTGGTCTGTGAATGGCACAGGTACCAGAAACTCTTTCAGACGAGGTTCTTGGAAAGATGGGCGCACCAGCCAAAGGCGATGCACCAATTATCACACCTAATGACCTTGCTGAAAGTGACGGCTTTGTGTTTGGATTCCCAACTAGATTTGGGATGATGTCTGCTCAGTTCAAGGCATTTCTTGATGCTACTGGTGGTCTTTGGAGAACTCAGCAGCTTGCAGGCAAGCCAGCAGGCCTTTTCTACAGCACTGGCTCTCAAGGAGGTGGCCAAGAGACTACCGCGTTAGTCCCTTCTCCTCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
SNP_position 86
allele_1 T
allele_2 C
ASP_primer_S GCGGGCACTTTATTCATTGACAATGTGGAATCT
ASP_primer_L GCGGGCAGGGCGGCACTTTATTCATTGACAATGTGGAATCC
Common_primer AGCAGAATTTTAAGTAAAGGACCAGGA
enzyme Native Taq
dye SYBR Green I

Line allele-1 allele-2
AE-P03 T T
LS1934 C C
Nakate Shinkuro C C
WCGR112-8 T T

Population Linkage Group Position
AL2010 E_02 62.4
LW2010 E_02 45.6
LWA2010 LWA_02 47.435
LWAE2012 E_02 48.096
LWF2_2022 E_02 74.9

DB Program Definition E-Value

EST Name Species Strain