+Marker Data: est_chx03j07

Crop eggplant
Population AL2010
Linkage Group E_01
Marker Type SNP
Map Position 50.0
Annotation
Source Name CHX03J07
Source Type 16k_SmUnigene
Source Sequence
Developer NIVTS
Document

Typing_Method Tm-Shift
Marker_Class EST-misc
STS_primer_fwd ctagtgttgcgccaaagacagttg
STS_primer_rev caactgctgctgcagaaagtcttc
amplicon_seq NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTGAAAAAACTGTTGTTGGTGAATTTAGTGAAGTGAAACATGTTAGAGGAATCCTTTCGATGGGAAGGTAATATTTGTTGATTTTCTTGGTTACAAATAGCTAGATCTATACTAAGTTTTAACCATGGTACACTTATTCCTTTGAGATACGGTGTTCCTCTTTAATTTTTCTTTTTAACAAGCACTGCTATATATTATAACCTCACGCTTATAAGAAATGTTCATCAGGAGCAAATCACATGATATAGTCTACTATCTTTTGTTGGGTGACAGTGCTTGTTAAGAAGCTGTACATTTAATTTCTAAAATAGGGTATATTTGGAGAAATTCAAGTAGAAATTGTCTAGTATATTGCGTTCCCTCCTTTCCCACAGATGGTCATGGTCTATGCTAAAGATTGATCGAGGTGTATCTGGATATTGTCTTGGATATGTAAATTAAGATGAAAGGCTATGGATATTGAATGTTATGTGTAATTAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCTNNNNNNNNNNNNNNNNNNNNCTCGACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACCGCTAGAATTTATGTGCCATGTCAGCTTTGGGTATCCACAATATAGTGGGACGAGTTAGAGTATGTAGTTGCCAGTTGAGATCAAGTTGATGTGTTTAGACGTGCACTCTCAAAGTTGGAGTGTTTACTTGCCAATTGAGACCAAGTTTAAGCGTCTATTTATGTATCATGCCTTAAGCTTTTCTAAGGGAAATTTTTAGTTGTATGACGCTATTCTTGGCAGAAGTAGACAATATCTACCAAGGAGATCTAGGTTATTTGTTTGCTCCCCAAACCATCATACCAAAATTTCAAAATAAAAAGGTGCTCCATGACAACAATGTAGGATGGTGTGCTTTTATGGAATTATGGTGAATCGGGTACGATGACTTTGACAATGTGTTGTTTACATCCTCCTTTTTTGTCTCTGATTTTNAGATCAAATGAATATTGAATGATCAGTGCAAAAGTCATGCTTTCTTATAAAGTTCTTAGCTTCTATNTCTTCCATCTTATGTCNNNNNNNNNNNNNNNNNNNNNNNNNNNN
SNP_position 421
allele_1 A
allele_2 C
ASP_primer_S GCGGGCAGAAATGTTCATCAGGAGCAAATCACA
ASP_primer_L GCGGGCAGGGCGGCAGAAATGTTCATCAGGAGCAAATCCCC
Common_primer AACAAGCACTGTCACCCAACAAAAGAT
enzyme Stoffel frag.
dye EvaGreen

Line allele-1 allele-2
AE-P03 C C
LS1934 A A
Nakate Shinkuro A A
WCGR112-8 C C

Population Linkage Group Position
AL2010 E_01 50.0
ALF2 AL01 41.8
LW2010 E_01 47.7
LWA2010 LWA_01 42.017
LWAE2012 E_01 47.042
LWF2_2022 E_01 147.0
NAF2 NA01 9.9

DB Program Definition E-Value

EST Name Species Strain