| Crop | eggplant |
|---|---|
| Population | AL2010 |
| Linkage Group | E_04 |
| Marker Type | SSR |
| Map Position | 21.9 |
| Annotation | |
| Source Name | emj03E23 |
| Source Type | genomic |
| Source Sequence | CCAACTTTGCTGGATCATCTACTGCTCCTATTGTGAATTC TGTTCACCATCGAATTGTTGCTATTGCAAAAATTACATCG ACCACTTTGGTGAGTTTAATAAATACAGAAGCCTGCTTGG ATTACTTTCAAAATGGAGTAACATATACACCCGTTTATGG CTCTACAGGTGGGAGTTTTCTATATTGAGGCTGAAATGTC AATAACGGATGATATTCAAGACTTTTGCATGCTGGAATGC TCAGGCTGCAAACAAAAGAAGCGCACAAAGGAGAGAAAGC AATTTGACTGCCCAAAGTGCCAACGGAAGACAATATTAGT GCCTCGGTATTATATTTACACACACACACACACACACACA CACACACACATATATATATATATATATATATATATTTGTG CAACAAAATATAACATATATAACCAATATTTCAGGTATTA ATTGACTGTGATTGTAGGTGTACATTTCAAATTGATTTGA TTGATGGCAACGATTCGATAACAGCTTCTATTTCCTGTGA TCTTGCTGAAAC |
| Developer | NIVTS |
| Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
| motif | (ac)16a(ta)12tttgtgcaacaaaatataaca(ta)3 |
|---|---|
| PCR product (bp) | 248 |
| fwd primer | emj03E23/U |
| fwd primer seq. | cgcacaaaggagagaaagcaattt |
| rev primer | emj03E23/L |
| rev primer seq. | agaagctgttatcgaatcgttgcc |
| fluor. primer | emj03E23/U_VIC |
| dye | VIC |
| fluor. Primer seq. | VIC-agcacaaaggagagaaagcaattt |
| PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
| polymerase | Roche Taq |
| Line | allele-1 | allele-2 |
|---|---|---|
| AE-P03 | 275 | 275 |
| EPL-1 | 251 | 251 |
| LS1151 (S.linneanum) | 213 | 213 |
| LS1934 | 249 | 249 |
| LS4021 (S. incanum) | 238 | 238 |
| Nakate Shinkuro | 249 | 249 |
| Senryo 2 | 251 | 251 |
| Shironasu | 249 | 249 |
| WCGR112-8 | 245 | 245 |
| White Egg | 251 | 251 |
| Population | Linkage Group | Position |
|---|---|---|
| AL2010 | E_04 | 21.9 |
| ALF2 | AL04 | 64.9 |
| EW2009 | LG05 | 54.0 |
| LW2010 | E_04 | 50.9 |
| LWA2010 | LWA_04 | 54.075 |
| LWAE2012 | E_04 | 54.046 |
| LWF2_2022 | E_04 | 72.9 |
| NAF2 | NA04 | 69.8 |
| DB | Program | Definition | E-Value |
|---|---|---|---|
| TomatoBAC_end | BLASTN | LE_HBa0110E01_T7_35137 Chromat_file:LE_HBa_110_E01-T7 SGN_GSS_ID:35137 (vector and quality trimmed) | 3e-10 |
| TomatoBAC_end | BLASTN | LE_HBa0055G17_T7_82113 Chromat_file:LE_HBa_055_G17-T7 SGN_GSS_ID:82113 (vector and quality trimmed) | 1e-09 |
| TomatoBAC_end | BLASTN | LE_HBa0059M15_T7_47069 Chromat_file:LE_HBa_059_M15-T7 SGN_GSS_ID:47069 (vector and quality trimmed) | 1e-09 |
| TomatoBAC_end | BLASTN | LE_HBa0012O13_SP6_6456 Chromat_file:LE_HBa_012_O13-SP6 SGN_GSS_ID:6456 (vector and quality trimmed) | 1e-09 |
| TomatoBAC_end | BLASTN | SL_EcoRI0006G14_SP6_289675 Chromat_file:SL_EcoRI_006_G14-SP6 SGN_GSS_ID:306501 (vector and quality trimmed) | 3e-07 |
| EST Name | Species | Strain |
|---|
