Crop | eggplant |
---|---|
Population | AL2010 |
Linkage Group | E_09 |
Marker Type | SSR |
Map Position | 52.0 |
Annotation | |
Source Name | emj02F08 |
Source Type | genomic |
Source Sequence | NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNTNNNNNNNNNNNNNNNNNNNNNNNNCCATAAATTCTTG AAATTATCAAAAATATGTACATAAATTTTTATTTTATACA TACATATATATACACACACATACACACACCCATGATAATC AAGAGAGGGAGGGTGAATTGAAAATATATCCATGAATTTT TATTTTATACATACATATACACACACATACACACACCCAT GATATTCAAGAGAGGGAGGGTGAATTGAAAATTTTGCTAG TCGGCTATCCAAGACAGGCAGTTCACTTACTTGCAGGTTA GTTCAATAGAAGATGATGATGATGATGATGATGATGACGA CGACGACGACAATGACGATGACAAATTTTATACTAGTTTG GATCACTGGTGTGGTGCCTAGTCCAATCCTCTTGGTTTAC AAGNNNNNTACTCAGCGGGCATAGGNNNNNNNNNNNNNNN NNNNNNNNNAANNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNN |
Developer | NIVTS |
Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
motif | (gat)8ga(cga)4 |
---|---|
PCR product (bp) | 186 |
fwd primer | emj02F08/U |
fwd primer seq. | caagagagggagggtgaattgaaa |
rev primer | emj02F08/L |
rev primer seq. | agaggattggactaggcaccacac |
fluor. primer | emj02F08/U_FAM |
dye | FAM |
fluor. Primer seq. | FAM-atagagagggagggtgaattgaaa |
PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
polymerase | Roche Taq |
Line | allele-1 | allele-2 |
---|---|---|
AE-P03 | 195 | 195 |
EPL-1 | 192 | 192 |
LS1151 (S.linneanum) | 203 | 203 |
LS1934 | 189 | 189 |
LS4021 (S. incanum) | 204 | 204 |
Nakate Shinkuro | 192 | 192 |
Senryo 2 | 192 | 192 |
Shironasu | 192 | 192 |
WCGR112-8 | 161 | 161 |
White Egg | 189 | 189 |
Population | Linkage Group | Position |
---|---|---|
AL2010 | E_09 | 52.0 |
LWA2010 | LWA_09 | 57.104 |
LWAE2012 | E_09 | 42.555 |
DB | Program | Definition | E-Value |
---|---|---|---|
TomatoBAC_end | BLASTN | SL_EcoRI0028N22_T7_233627 Chromat_file:SL_EcoRI_028_N22-T7 SGN_GSS_ID:250453 (vector and quality trimmed) | 8e-08 |
TomatoBAC_end | BLASTN | SL_MboI0114C16_T7_195892 Chromat_file:SL_MboI_114_C16-T7 SGN_GSS_ID:212718 (vector and quality trimmed) | 8e-08 |
TomatoBAC_end | BLASTN | SL_MboI0115H05_T7_301623 Chromat_file:SL_MboI_115_H05-T7 SGN_GSS_ID:318449 (vector and quality trimmed) | 5e-06 |
EST Name | Species | Strain |
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