+Marker Data: emi04F02

Crop eggplant
Population AL2010
Linkage Group E_04
Marker Type SSR
Map Position 7.9
Annotation
Source Name emi04F02
Source Type genomic
Source Sequence CTCGAATTCTCTTCCCAAGTAAGTACAATATATACTTATC AAAATAAACAATTCTCCTCCGTGCCTCTTAAAGTAACATC CTACATTTGAGAATGAATTTCACGCAAATAGTGCCTCACA GTCTCCAGCTCCACCCAAATCTTACGGAATTGATCTCTGT TATTATCATTAGGTGCCATTAATTTTTATGGTTGATTAAT CACTGGCCAAAAATAAGAAAAGAAATTAGTTGCTATAATC AAACCTCAGTGTGTGTGTGTGTGTGTGTGTGTGTATATAT ATATATATATATATATATATATATATATATATATATCCAT TCTTTTGTGCCATAGGAATTACCATAAAATTACCTTATTC ATAAGGTAGGAATGCACAGCCATTCCTTTGTGCCATAAGA ATTACTGTGAAATTATCTTATTCTTAACGTGGGAAGGAGT ATCCACTCTTTTGTACCCTAAGAATTACTATGAAGTTACC TTATTATTAGCGCAAGAATGTTTACATAAGAATTACCATG AAATTACCTATTCTTAGGGATGTATGCGTATCCATTCCTT TGCGCCATAAGAATTACCATGGAATTACCATATTCTTAGG GTGGGAATGCGAATC
Developer NIVTS
Document Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153

motif (tg)12(ta)21
PCR product (bp) 275
fwd primer emi04F02/U
fwd primer seq. agctccacccaaatcttacggaat
rev primer emi04F02/L
rev primer seq. ttcttatggcacaaaggaatggct
fluor. primer emi04F02/U_NED
dye NED
fluor. Primer seq. NED-agctccacccaaatcttacggaat
PCR condition 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C
polymerase Roche Taq

Line allele-1 allele-2
AE-P03 281 281
EPL-1 281 281
LS1151 (S.linneanum) 239 239
LS1934 287 287
LS4021 (S. incanum) 277 277
Nakate Shinkuro 289 289
Senryo 2 281 281
Shironasu 285 285
WCGR112-8 281 281
White Egg 279 279

Population Linkage Group Position
AL2010 E_04 7.9
ALF2 AL04 39.7
LW2010 E_04 41.6
LWA2010 LWA_04 43.176
LWAE2012 E_04 42.676
LWF2_2022 E_04 62.1
NAF2 NA04 56.3

DB Program Definition E-Value

EST Name Species Strain