Crop | eggplant |
---|---|
Population | AL2010 |
Linkage Group | E_04 |
Marker Type | SSR |
Map Position | 7.9 |
Annotation | |
Source Name | emi04F02 |
Source Type | genomic |
Source Sequence | CTCGAATTCTCTTCCCAAGTAAGTACAATATATACTTATC AAAATAAACAATTCTCCTCCGTGCCTCTTAAAGTAACATC CTACATTTGAGAATGAATTTCACGCAAATAGTGCCTCACA GTCTCCAGCTCCACCCAAATCTTACGGAATTGATCTCTGT TATTATCATTAGGTGCCATTAATTTTTATGGTTGATTAAT CACTGGCCAAAAATAAGAAAAGAAATTAGTTGCTATAATC AAACCTCAGTGTGTGTGTGTGTGTGTGTGTGTGTATATAT ATATATATATATATATATATATATATATATATATATCCAT TCTTTTGTGCCATAGGAATTACCATAAAATTACCTTATTC ATAAGGTAGGAATGCACAGCCATTCCTTTGTGCCATAAGA ATTACTGTGAAATTATCTTATTCTTAACGTGGGAAGGAGT ATCCACTCTTTTGTACCCTAAGAATTACTATGAAGTTACC TTATTATTAGCGCAAGAATGTTTACATAAGAATTACCATG AAATTACCTATTCTTAGGGATGTATGCGTATCCATTCCTT TGCGCCATAAGAATTACCATGGAATTACCATATTCTTAGG GTGGGAATGCGAATC |
Developer | NIVTS |
Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
motif | (tg)12(ta)21 |
---|---|
PCR product (bp) | 275 |
fwd primer | emi04F02/U |
fwd primer seq. | agctccacccaaatcttacggaat |
rev primer | emi04F02/L |
rev primer seq. | ttcttatggcacaaaggaatggct |
fluor. primer | emi04F02/U_NED |
dye | NED |
fluor. Primer seq. | NED-agctccacccaaatcttacggaat |
PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
polymerase | Roche Taq |
Line | allele-1 | allele-2 |
---|---|---|
AE-P03 | 281 | 281 |
EPL-1 | 281 | 281 |
LS1151 (S.linneanum) | 239 | 239 |
LS1934 | 287 | 287 |
LS4021 (S. incanum) | 277 | 277 |
Nakate Shinkuro | 289 | 289 |
Senryo 2 | 281 | 281 |
Shironasu | 285 | 285 |
WCGR112-8 | 281 | 281 |
White Egg | 279 | 279 |
Population | Linkage Group | Position |
---|---|---|
AL2010 | E_04 | 7.9 |
ALF2 | AL04 | 39.7 |
LW2010 | E_04 | 41.6 |
LWA2010 | LWA_04 | 43.176 |
LWAE2012 | E_04 | 42.676 |
LWF2_2022 | E_04 | 62.1 |
NAF2 | NA04 | 56.3 |
DB | Program | Definition | E-Value |
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EST Name | Species | Strain |
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