Crop | eggplant |
---|---|
Population | AL2010 |
Linkage Group | E_11 |
Marker Type | SSR |
Map Position | 59.3 |
Annotation | |
Source Name | emi03L23 |
Source Type | genomic |
Source Sequence | TCTGCTCTTTCTTTTATTCAGATCTTATCTACTCACCACA GGGTGATGATAAATGTTGTTTGTTCAGAAAATGAAAGACT GATTTTTGAGAAATGTGTGTGTGTGTTTTCTTTTGTTCTT TTTTACACGATGTAAAACTTAAAATATTTCTCAGTTACTT AATTTATACTCGTTTTTGGTGCCAAGCTATGAATCTTAGA TCTATCTTTGGATTTGGTGATGGGTTTATTGTATGATGGT ATTAACAAGTGTTGGTGGGTTGTTCTACATTTAGTTTCCT TGCATGATTTCACTCTTGAATTGCATGGGTATACATTAAC ATTATACACCCACCAAGTGCTTGATAAAATATTCGGATTA TGGTTCATGATTATTGAAGGCCTAATGCTTGGGATATGAG TTAAGTGACATTATGATGATGAAAGGATGGTATGTATATG TTGATTTTATGAGAACCATCTATAGTGTTGTGAGTTAACC ATAGCCAATTGAGAGGTGATGCCTCAATAGCCTCAAATAG GGGCGCTAAGCCATCAAACAATTAA |
Developer | NIVTS |
Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
motif | (tg)6 |
---|---|
PCR product (bp) | 161 |
fwd primer | emi03L23/U |
fwd primer seq. | caccacagggtgatgataaatgttg |
rev primer | emi03L23/L |
rev primer seq. | attcatagcttggcaccaaaaacg |
fluor. primer | emi03L23/U_PET |
dye | PET |
fluor. Primer seq. | PET-atccacagggtgatgataaatgttg |
PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
polymerase | Roche Taq |
Line | allele-1 | allele-2 |
---|---|---|
AE-P03 | 164 | 164 |
EPL-1 | 164 | 164 |
LS1151 (S.linneanum) | 165 | 165 |
LS1934 | 162 | 162 |
LS4021 (S. incanum) | 164 | 164 |
Nakate Shinkuro | 165 | 165 |
Senryo 2 | 165 | 165 |
Shironasu | 164 | 164 |
WCGR112-8 | 163 | 163 |
White Egg | 164 | 164 |
Population | Linkage Group | Position |
---|---|---|
AL2010 | E_11 | 59.3 |
ALF2 | AL11 | 70.3 |
EW2009 | LG01 | 35.1 |
LWA2010 | LWA_11 | 60.184 |
LWAE2012 | E_11 | 58.456 |
DB | Program | Definition | E-Value |
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EST Name | Species | Strain |
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