Crop | eggplant |
---|---|
Population | AL2010 |
Linkage Group | E_07 |
Marker Type | SSR |
Map Position | 14.3 |
Annotation | |
Source Name | emi01L21 |
Source Type | genomic |
Source Sequence | TTTAAATCAATTTATATTAATTCGTCTTGTAATCAAATTA ATCAATAGAATTCGATTTGATTGATGTTTGCAATTTCAAA TGGCCATTTTCTCAATCTAATTTCCCTACCCTTAAACTTT TATTTTTCCTTTCTTTTTCAGACCAATTGGTCCTTTTTGG ACCAAAATTGGCCCATTTATTTTCACTAACCCAGCCTAGA CGTCCCTTAAACCCGGCCCACTTGCCCTCATTTTAACATT TTCAGCATAGACATACATACCATATATACAATACACACAC ACACACACACACTACACGTGGGTTCTCCTTTCTTTCTTTC CCCTTCACGCGTCTCACTCTCCCCTTCATCTTTCTTCTTC GCAGAACCAGCAGA |
Developer | NIVTS |
Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
motif | (ta)3caat(ac)10 |
---|---|
PCR product (bp) | 106 |
fwd primer | emi01L21/U |
fwd primer seq. | cccacttgccctcattttaacattt |
rev primer | emi01L21/L |
rev primer seq. | gggaaagaaagaaaggagaaccca |
fluor. primer | emi01L21/U_PET |
dye | PET |
fluor. Primer seq. | PET-accacttgccctcattttaacattt |
PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
polymerase | Roche Taq |
Line | allele-1 | allele-2 |
---|---|---|
AE-P03 | 107 | 107 |
EPL-1 | 109 | 109 |
LS1151 (S.linneanum) | 208 | 208 |
LS1934 | 109 | 109 |
LS4021 (S. incanum) | 125 | 125 |
Nakate Shinkuro | 109 | 109 |
Senryo 2 | 109 | 109 |
Shironasu | 109 | 109 |
WCGR112-8 | 109 | 109 |
White Egg | 109 | 109 |
Population | Linkage Group | Position |
---|---|---|
AL2010 | E_07 | 14.3 |
LWA2010 | LWA_07 | 37.734 |
LWAE2012 | E_07 | 31.308 |
DB | Program | Definition | E-Value |
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EST Name | Species | Strain |
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