Crop | eggplant |
---|---|
Population | AL2010 |
Linkage Group | E_07 |
Marker Type | SSR |
Map Position | 15.1 |
Annotation | |
Source Name | emh11O09 |
Source Type | genomic |
Source Sequence | ACTATGTATATCATAACATGTATGCAGTTGGGGTATGAAC CAATTAGTGGTTAACATTCTTCCCAAAATTTGACACAAAG AACCAACTAATCTAGCTGTCCTCAAATTTTCAGGTGTTAG GATGGATTCTTAAACTGCCAAACCATGGAAAAACGGAATT ACTGGTAATCTTCATATTTTCATACTTGTTTGTGATAAAT GATAAATCAAATATCATTCAGTGAATTAGAGCAAGTTGGT GTAGCTATTCAAAAGTGAGTTGATATTAGTATGCATCGGA CCACCCAAAGCGTAGCCAATTATCTGGTTTTTTTTTTTTT TTGAGAATGGTAACTTTTTTCTATTTTATATATATATATA TATATATATACACACACACACACACACACACACACACACA CAGGTATACTACATTAAAGTAGTCCCCCTAGCAAAAACAA TTACAAGTTGAATATACACTATCAGTCCTTTTTGTCACAG ATAGTCTAATATATCAAATAAATCCTCTACCTAACCTAGG ACTTCCTATTTACAATAGAAATAATAAAGGGCTAAACAAT CATCTTAAAGGTCTGT |
Developer | NIVTS |
Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
motif | (ta)11t(ac)16 |
---|---|
PCR product (bp) | 163 |
fwd primer | emh11O09/U |
fwd primer seq. | ccaaagcgtagccaattatctggt |
rev primer | emh11O09/L |
rev primer seq. | cttgtaattgtttttgctaggggga |
fluor. primer | |
dye | |
fluor. Primer seq. | |
PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
polymerase | Roche Taq |
Line | allele-1 | allele-2 |
---|---|---|
AE-P03 | 170 | 170 |
EPL-1 | 170 | 170 |
LS1151 (S.linneanum) | ||
LS1934 | 168 | 168 |
LS4021 (S. incanum) | 146 | 146 |
Nakate Shinkuro | 168 | 168 |
Senryo 2 | 168 | 168 |
Shironasu | 180 | 180 |
WCGR112-8 | 182 | 182 |
White Egg | 182 | 182 |
Population | Linkage Group | Position |
---|---|---|
AL2010 | E_07 | 15.1 |
LWA2010 | LWA_07 | 37.309 |
LWAE2012 | E_07 | 31.873 |
DB | Program | Definition | E-Value |
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EST Name | Species | Strain |
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