Crop | eggplant |
---|---|
Population | AL2010 |
Linkage Group | E_04 |
Marker Type | SSR |
Map Position | 13.3 |
Annotation | |
Source Name | emh11I06 |
Source Type | genomic |
Source Sequence | ACCTCCATCGAGATGAATGATTCCTTTTGCATCTTGGACT ATGGCTGGGATGGATGACTCCTTCTTAGACTGTTTCGAGT TCATTTCTATACATGACCACTAGATCTTCTGACTCTTTCT GAATAAAGATGACCTCCTCCATATTGTCAAAGACATTAGT GTCTGTTTTGTGAGGTCTGCAGTTAATAAACTTCTCAACC TTAATTGCAGCATGTCCGACCACCCTGTATTGAATGCCAT TGATTACCAATCTCCTCCTTCCTTGAATTCGGATGATAGT AATGTGATGTCCATGCTTGTTAAAGTTTCTCACACAAAAA GAACTCTAAAGAGTGATCATAGAGTTACTCTTCACTTTCG ATGCCTTCCTTTAGAGATGCACATATCTAGAGCATTGTCT TCCCGTTGAAAGAAGTTTGTTGATTAAGTTCCGCCCTCGT TCTGTCCATTCAAACCGTTCCTCTGCTCTTGCTACACTTC TGCTAATATTACACAACGTGTAAGCCAAAACAAAGTATAT TGTATCTTTTATCTCACTAACGCTGGAAAGAGATAGAGGG GGGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG AGAGAGAAGAAAAGGAAGAAGATTTCAACAGAAAACACAG TGGATGAAATCTGAGCTACCAAGCAACTTGGTGGCTGGCA AAAGCGTCGGAGAAGGCTGATCTACAATCCTAAGATGTAG GAAAGAGGAGCCTTGATGATTGTGCCTGGGAATATTTTTG ATACGTTACAAGTCAAAGAAAATTGT |
Developer | NIVTS |
Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
motif | (ag)21 |
---|---|
PCR product (bp) | 299 |
fwd primer | emh11I06/U |
fwd primer seq. | cattcaaaccgttcctctgctctt |
rev primer | emh11I06/L |
rev primer seq. | gcacaatcatcaaggctcctcttt |
fluor. primer | emh11I06/U_VIC |
dye | VIC |
fluor. Primer seq. | VIC-atttcaaaccgttcctctgctctt |
PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
polymerase | Roche Taq |
Line | allele-1 | allele-2 |
---|---|---|
AE-P03 | 303 | 303 |
EPL-1 | 301 | 301 |
LS1151 (S.linneanum) | 274 | 274 |
LS1934 | 301 | 301 |
LS4021 (S. incanum) | 268 | 268 |
Nakate Shinkuro | 301 | 301 |
Senryo 2 | 301 | 301 |
Shironasu | 301 | 301 |
WCGR112-8 | 289 | 289 |
White Egg | 301 | 301 |
PI 286106 | 289 | 289 |
Population | Linkage Group | Position |
---|---|---|
AL2010 | E_04 | 13.3 |
ALF2 | AL04 | 52.0 |
EW2009 | LG05 | 45.0 |
LW2010 | E_04 | 45.3 |
LWA2010 | LWA_04 | 47.468 |
LWAE2012 | E_04 | 46.53 |
LWF2_2022 | E_04 | 66.1 |
N28F2 | E_04 | 54.8 |
DB | Program | Definition | E-Value |
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EST Name | Species | Strain |
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