Crop | eggplant |
---|---|
Population | AL2010 |
Linkage Group | E_11 |
Marker Type | SSR |
Map Position | 52.9 |
Annotation | |
Source Name | emh11C20 |
Source Type | genomic |
Source Sequence | ACTAAAACAAAAGACATGTGAAAAATAACACACTTACACT TAACAGTAGACAAAAAAAAAACCTTCCTCCTCCACCCCTT TATTCTTTGTCCCCGTTGATCTTATTTATCTGAAGGAGAT TGGGGAAACACCAACTCCACAAAACCCACACACACACACA CACACGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG AGAGAGAGACAGAGAGAGAGAGTGCAACGTTACAATTCTG TAATGGGGAAAGACAGAGAATGGCAGGTAAAATTGAGGGG CTAATAAGCAAGACGT |
Developer | NIVTS |
Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
motif | (ac)9g(ag)21ac(ag)6 |
---|---|
PCR product (bp) | 200 |
fwd primer | emh11C20/U |
fwd primer seq. | ctccacccctttattctttgtccc |
rev primer | emh11C20/L |
rev primer seq. | tacctgccattctctgtctttccc |
fluor. primer | emh11C20/U_VIC |
dye | VIC |
fluor. Primer seq. | VIC-atccacccctttattctttgtccc |
PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
polymerase | Roche Taq |
Line | allele-1 | allele-2 |
---|---|---|
AE-P03 | 199 | 199 |
EPL-1 | 201 | 201 |
LS1151 (S.linneanum) | 194 | 194 |
LS1934 | 199 | 199 |
LS4021 (S. incanum) | 169 | 169 |
Nakate Shinkuro | 199 | 199 |
Senryo 2 | 199 | 199 |
Shironasu | 199 | 199 |
WCGR112-8 | 200 | 200 |
White Egg | 199 | 199 |
Population | Linkage Group | Position |
---|---|---|
AL2010 | E_11 | 52.9 |
LWA2010 | LWA_11 | 53.846 |
LWAE2012 | E_11 | 51.94 |
DB | Program | Definition | E-Value |
---|
EST Name | Species | Strain |
---|