Crop | eggplant |
---|---|
Population | AL2010 |
Linkage Group | E_10 |
Marker Type | SSR |
Map Position | 66.3 |
Annotation | |
Source Name | emh03H05 |
Source Type | genomic |
Source Sequence | CTCTAGATGTACCCCGCCCTTTATTTTCCAAAACTTGCCT TTGATATTATCCATGAGAGAGAAAGTTGTGTCTCCAAAGA GTTTAATGTTACCACCTAAGAGTGAGATGTGAGGTCTTAT AAACCCTGAGTAGAATTGAATCATCCTAGAGTTAGAAGGA TGATGATGGAAAGAAAAGGACGAGATAGCAAGAGTAATGA CCAATTGAGGCTTATAGTTAGAGATATGTATCTATTAGGT AACTAGTGAAGGGATAAATCGATGGCTATAAACTTGATGA AAAAGTCGAAAGTACCCTATGATTTCCATGATGAGATGAG GTATAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGAATG AGAGAGTTAGTGTTAGAATGTGTTAGAACGTACCCCAAAC AAGAAGGAAGTATATGTTGATGTGTTGTAGTATTCATACT ATTGAGGATGAAGTGTAG |
Developer | NIVTS |
Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
motif | (ag)14aaagaatg(ag)3 |
---|---|
PCR product (bp) | 248 |
fwd primer | emh03H05/U |
fwd primer seq. | tgatgatggaaagaaaaggacgaga |
rev primer | emh03H05/L |
rev primer seq. | tccttcttgtttggggtacgttct |
fluor. primer | emh03H05/U_NED |
dye | NED |
fluor. Primer seq. | NED-agatgatggaaagaaaaggacgaga |
PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
polymerase | Roche Taq |
Line | allele-1 | allele-2 |
---|---|---|
AE-P03 | 249 | 249 |
EPL-1 | 249 | 249 |
LS1151 (S.linneanum) | 245 | 245 |
LS1934 | 251 | 251 |
LS4021 (S. incanum) | 221 | 221 |
Nakate Shinkuro | 249 | 249 |
Senryo 2 | 249 | 249 |
Shironasu | 247 | 247 |
WCGR112-8 | 250 | 250 |
White Egg | 242 | 242 |
Population | Linkage Group | Position |
---|---|---|
AL2010 | E_10 | 66.3 |
ALF2 | AL10 | 63.7 |
LW2010 | E_10 | 56.5 |
LWA2010 | LWA_10 | 59.013 |
LWAE2012 | E_10 | 65.417 |
LWF2_2022 | E_10 | 59.8 |
DB | Program | Definition | E-Value |
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EST Name | Species | Strain |
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