Crop | eggplant |
---|---|
Population | AL2010 |
Linkage Group | E_07 |
Marker Type | SSR |
Map Position | 14.3 |
Annotation | |
Source Name | emh03H03 |
Source Type | genomic |
Source Sequence | TTTTAAGGCCTTGCTAGCAAACGTGCGACTAATGCGCGCT TACGACCTGAAGTGAGGCTCAAAACACGTCAAGCACTTTG CCTCATTTAATGTGAACTTGAATGCCATCATTAGGGCTCT TAAGTCAAATTTTTCCTTGTGAAATAAGTGTTTACTAAAG AAGCGACACTAAACAATTGACATTTCTTTAAAAAAAACAA TTTCTTTGTCTTCATATTATTATTCACGCTTATATTTTTT TGTCTCGGACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC TCTCTCTCATATATATATATATTTTCTATTTGCACCTTCT TTCATTAAACCATGCTTTATTTGCACTTTGCGTTTAAAGC TTTAACATAGTTCATAGACATGTTCATACTAGTAAACACA TTTGTAAAATCAACTTTAAATCATGAAAATTGAGTAAAAA GAAGATTAGGGCACCATGGGTAGAAGGACCCAATAGCTAA AACCTACATAGGCTTCTGCTAGCAAGGCCA |
Developer | NIVTS |
Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
motif | (tat)3tcacgcttatatttttttgtctcggac(tc)19a(ta)6 |
---|---|
PCR product (bp) | 297 |
fwd primer | emh03H03/U |
fwd primer seq. | gctcaaaacacgtcaagcactttg |
rev primer | emh03H03/L |
rev primer seq. | acgcaaagtgcaaataaagcatgg |
fluor. primer | emh03H03/U_VIC |
dye | VIC |
fluor. Primer seq. | VIC-actcaaaacacgtcaagcactttg |
PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
polymerase | Roche Taq |
Line | allele-1 | allele-2 |
---|---|---|
AE-P03 | 305 | 305 |
EPL-1 | 301 | 301 |
LS1151 (S.linneanum) | 286 | 286 |
LS1934 | 299 | 299 |
LS4021 (S. incanum) | 294 | 294 |
Nakate Shinkuro | 304 | 304 |
Senryo 2 | 299 | 299 |
Shironasu | 299 | 299 |
WCGR112-8 | 301 | 301 |
White Egg | 293 | 293 |
Population | Linkage Group | Position |
---|---|---|
AL2010 | E_07 | 14.3 |
LWA2010 | LWA_07 | 37.735 |
LWAE2012 | E_07 | 31.318 |
DB | Program | Definition | E-Value |
---|---|---|---|
TomatoBAC_end | BLASTN | SL_MboI0135C20_SP6_381818 Chromat_file:SL_MboI_135_C20-SP6 SGN_GSS_ID:399012 (vector and quality trimmed) | 5e-06 |
TomatoBAC_end | BLASTN | LE_HBa0020D07_SP6_132625 Chromat_file:LE_HBa_020_D07-SP6 SGN_GSS_ID:149456 (vector and quality trimmed) | 5e-06 |
TomatoBAC_end | BLASTN | LE_HBa0197P20_SP6_110958 Chromat_file:LE_HBa_197_P20-SP6 SGN_GSS_ID:110956 (vector and quality trimmed) | 5e-06 |
EST Name | Species | Strain |
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