Crop | eggplant |
---|---|
Population | AL2010 |
Linkage Group | E_03 |
Marker Type | SSR |
Map Position | 87.8 |
Annotation | |
Source Name | emh02B10 |
Source Type | genomic |
Source Sequence | CTGCAAATTATAATGATATATTATATTTTTTTATAATTTA TTCTTAATTTAGTCAAGTCCAAAGACGAATATTAGATATG ATAGAGCGAATTTGCGTAAAAAGAAACAAAACTAGTTTCT GTGTGTGATGTCCACACCTGACGCCTTCAGCGCTGCCACA AAACTGAGAAACGAAATGAAAGGAGAGGAGAGGAACGAAA ACCGAGGCACCTCTATTAACAACCACTCTCTTTCTGCTCT GCTTATTTCTCAGACTCCTTTTATAATTAATACAGTATTT ATACATTCTGCTTATACGGATTTGTATTTCTTATGGATAT CCCAACTTCTATTTATACGGAAAACGCACAAGCAGATGTT GTAATTTTTCAAAATGTCGCACAAAATAGAAGGTAAATTT TCTAAAATGAAAAATAATTTAAAAAAATACTGCTAAACTA TCACAAAATACCTAAATACATCTCAACGCTGAATTAGTTT ATCGAATATCTCAAAATTTTGTATGTATACTCATGGGCAT GTGAATACAAGAAAAAATGAAATTGTTGTTCTCATCTTAT ATGTTCCACTTGTCCACCAGCAGAGAAAATAAGACATTTA TGGGCACCCGAAGAGTGTAACACACACACACACACACACA CACATATATATATATATTGTACACGCCAGTAATCTTCTTT CACTGGGATCTTCAAACTATGAG |
Developer | NIVTS |
Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
motif | (ac)12a(ta)6 |
---|---|
PCR product (bp) | 100 |
fwd primer | emh02B10/U |
fwd primer seq. | aataagacatttatgggcacccga |
rev primer | emh02B10/L |
rev primer seq. | cccagtgaaagaagattactggcg |
fluor. primer | emh02B10/U_FAM |
dye | FAM |
fluor. Primer seq. | FAM-attaagacatttatgggcacccga |
PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
polymerase | Roche Taq |
Line | allele-1 | allele-2 |
---|---|---|
AE-P03 | 111 | 111 |
EPL-1 | 111 | 111 |
LS1151 (S.linneanum) | 92 | 92 |
LS1934 | 103 | 103 |
LS4021 (S. incanum) | 100 | 100 |
Nakate Shinkuro | 111 | 111 |
Senryo 2 | 109 | 109 |
Shironasu | 111 | 111 |
WCGR112-8 | 111 | 111 |
White Egg | 109 | 109 |
Population | Linkage Group | Position |
---|---|---|
AL2010 | E_03 | 87.8 |
LW2010 | E_03 | 108.9 |
LWA2010 | LWA_03 | 110.831 |
LWAE2012 | E_03 | 118.104 |
LWF2_2022 | E_03 | 130.6 |
DB | Program | Definition | E-Value |
---|---|---|---|
TomatoBAC_end | BLASTN | SL_EcoRI0118H03_SP6_325576 Chromat_file:SL_EcoRI_118_H03-SP6 SGN_GSS_ID:342402 (vector and quality trimmed) | 1e-19 |
EST Name | Species | Strain |
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