+Marker Data: emh01F12

Crop eggplant
Population AL2010
Linkage Group E_03
Marker Type SSR
Map Position 9.0
Annotation
Source Name emh01F12
Source Type genomic
Source Sequence CCTTCAATTTATTATTTTTCCTTAATGAGCTAAAACACAT CTTATTTGGGATGGAGGAAATAGTAGTATATAGTTATGTC ATTTTCAGTCAATGCTCATTTTCGGTCAATGCTCATTTTG CAACTGTAAAATCGTATTTATCCTAGATATCTTCTTCTCG TTCACTCCACCTTTCTTCTTGTTCACTCAGCCTTATTGCC ATGTGTCCCCCTTTCTCTTAAATATTGTAGCTATATATGG ACACTCATTACTTAATAAGATACACATACTATTCATATAT ATATAGAGGGATCTGTAGAGAGAGAGAGAGAGAGAGAGAG AGACAGAGATGGATAATGGTAATCATGCTGGTGGTTCAGA TGGAGGATTCCATAGCTATCGAAGATCCTCACAACCAGCT CCTTCCTATTCCCAAACTTCTTCCCTTGGTATGCTACCTA GCTTCTCTTTTACATTTACATTAATCTTTATATTTGATAT GTTTACTCGAGCTAAACGAACTCTATTAAAACCTATCTCT AATGTTCACAAGGTAGGAGTAAGGCTATGT
Developer NIVTS
Document Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153

motif (ta)5gagggatctgt(ag)13
PCR product (bp) 236
fwd primer emh01F12/U
fwd primer seq. tcactcagccttattgccatgtgt
rev primer emh01F12/L
rev primer seq. agtttgggaataggaaggagctgg
fluor. primer emh01F12/U_FAM
dye FAM
fluor. Primer seq. FAM-acactcagccttattgccatgtgt
PCR condition 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C
polymerase Roche Taq

Line allele-1 allele-2
AE-P03 231 231
EPL-1 235 235
LS1151 (S.linneanum) 232 232
LS1934 231 231
LS4021 (S. incanum)
Nakate Shinkuro 231 231
Senryo 2 231 231
Shironasu 231 231
WCGR112-8 231 231
White Egg 231 231

Population Linkage Group Position
AL2010 E_03 9.0
EW2009 LG10 32.1
LWA2010 LWA_03 36.124
LWAE2012 E_03 45.423

DB Program Definition E-Value

EST Name Species Strain