+Marker Data: emh01E15

Crop eggplant
Population AL2010
Linkage Group E_10
Marker Type SSR
Map Position 2.3
Annotation
Source Name emh01E15
Source Type genomic
Source Sequence AGCACATATTAAATCTTGAACATCCTTAATGACATTTAGT TGCGAAAAAGTTAGACCCTGAGTGTGTGATCCGAGTTCGA GTCTCGGGCACAACACTTTGCATTATCGATTGAGGCATTG CGAGGAAGTTACGAAGAATTCTATCATAGAGTTGACCTAA AATACTCTGTAGATCTAAACATATTAAAATGTGAACATTG CTTTTATTAAATATATTTATACCGCCAAGCAAACGCATTA TAAATACTTTATCCTGCTCATATCACGTTAGTTTGCATAA ATGAAAGTCAACTCTCTCTCTCTCTCTCTCTCTCTCTCTC AGCTTCTCTTTCCCTGATCAAACCATTGCTGTCTTCTTAG TTTTTCTGAAAT
Developer NIVTS
Document Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153

motif (tc)14
PCR product (bp) 294
fwd primer emh01E15/U
fwd primer seq. tagaccctgagtgtgtgatccgag
rev primer emh01E15/L
rev primer seq. tggtttgatcagggaaagagaagc
fluor. primer emh01E15/U_NED
dye NED
fluor. Primer seq. NED-atgaccctgagtgtgtgatccgag
PCR condition 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C
polymerase Roche Taq

Line allele-1 allele-2
AE-P03 292 292
EPL-1 296 296
LS1151 (S.linneanum) 292 292
LS1934 296 296
LS4021 (S. incanum) 307 307
Nakate Shinkuro 298 298
Senryo 2 296 296
Shironasu 296 296
WCGR112-8 304 304
White Egg 296 296

Population Linkage Group Position
AL2010 E_10 2.3
EW2009 LG09 0.0
LWA2010 LWA_10 2.549
LWAE2012 E_10 4.594

DB Program Definition E-Value

EST Name Species Strain