| Crop | eggplant |
|---|---|
| Population | AL2010 |
| Linkage Group | E_08 |
| Marker Type | SSR |
| Map Position | 24.8 |
| Annotation | |
| Source Name | emg21J23 |
| Source Type | genomic |
| Source Sequence | TTAAGGCCTTGCTAGCAGTAAGCCCCATAGTTCTTCAAAA TATGCATCTCTCCTAAAATCAAGCCAACCTATATTTTCTG CAAAAATAAACACAAAAACACATAAAACCATAAAATGTCG TATTGAGAACACACAAAATTCCATGTTTTAGGCATCAAAT GTGCTATATTTTGGCAGACAACAACTTTATATGTGTATAT ATATGAGGATGGGACCATAACCGACATGAGACCAAGTCAG TTATGCCTTGGAACCCCGTTGTCTCCCCATAATAAATAAG AGGTGATCTACTTGCCAAAGGTAGATCCTTATCATACTTT CTCCTTTAGGGCATAAACATACACCTATGTTAGGCACATA GTTCAAGGAAAGGAGTATGGACCCTTGGGTATAGTCCACA TCGACTCCAATTCATCGGTGCTAGGTCATCATCCCACTAG AAAATACACACACACACACATACACATACACACACACACA CACACACACACACACACACACACACACACACACACACACA TATATATATATATATATATATATATATATATATTGCTTGT AAAAGAGGCATAGGACTTTCAAATTGTTTACATGCATTCT TAGGCTTAAAGGCCAAATTACATTCTTCATAATCCTGCAT AATAGACCAAAAAATCAAAACACTCTTCATAACATTTCAT GCATAGGATTAGCTCCTCACATAGTAGTGCAAACACCCAT ACTTGCTCAAAGAGCCCATAATCTTAGACATATATGTGAT CACATTCTTGTCATAGATATAATCTCATCAAGATCATATA CATAAACATAATTGGGTCTTGACCCACTTCATGCACATCA TAAAAATCATAGTCATGAATGCATATGCCATGAATGAGAT GCAAAATAGCATGGACAATAGAAATTCAAACTTAAATCAA TAATACATTATGAAATTCAAGTGAAAACATAGTTAAATTC ATATTTAAACCATAATATAAATTATCCATGCACAAATCAA GCTTTAAAGGGGACACGCATCTTCATAACTTCATAACTTT AATGTAAACCATCATAATAGGGATTTAATCAACTTAAAAT CATTAAATAAACACAACCCATACATCAATTGAATTTAATA AATCATAGTATTGAAAACCCATGTTTAAAGTAAGCTAAAT TCATGAAAAATTTACTTGAAAAGAGTTTGGATTTCCTTGG TTGAAAGGAACTAAGAATAAAAACACACATACCTTGATAA ATGAAGAAGTTTCAAGAGAAATTTGAAGAAAGAATGAGCT CTCCTTGATTCCCAAGTTTACAATCCACAAGA |
| Developer | NIVTS |
| Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
| motif | (ac)7atacacat(ac)26a(ta)16 |
|---|---|
| PCR product (bp) | 297 |
| fwd primer | emg21J23/U |
| fwd primer seq. | gactccaattcatcggtgctaggt |
| rev primer | emg21J23/L |
| rev primer seq. | tgaggagctaatcctatgcatgaaa |
| fluor. primer | emg21J23/U_FAM |
| dye | FAM |
| fluor. Primer seq. | FAM-atctccaattcatcggtgctaggt |
| PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
| polymerase | Roche Taq |
| Line | allele-1 | allele-2 |
|---|---|---|
| AE-P03 | 304 | 304 |
| EPL-1 | 298 | 298 |
| LS1151 (S.linneanum) | 260 | 260 |
| LS1934 | 302 | 302 |
| LS4021 (S. incanum) | 281 | 281 |
| Nakate Shinkuro | 298 | 298 |
| Senryo 2 | 298 | 298 |
| Shironasu | 296 | 296 |
| WCGR112-8 | 304 | 304 |
| White Egg | 304 | 304 |
| Population | Linkage Group | Position |
|---|---|---|
| AL2010 | E_08 | 24.8 |
| LWA2010 | LWA_08 | 27.439 |
| LWAE2012 | E_08 | 28.451 |
| DB | Program | Definition | E-Value |
|---|
| EST Name | Species | Strain |
|---|
